Variant report

Variant	rs73236276
Chromosome Location	chr14:35056565-35056566
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11156849	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12435717	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12586808	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12590540	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12878227	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12878854	0.83[EUR][1000 genomes]
rs12884427	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12884997	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12885352	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12890311	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12895640	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13826	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17524152	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs28515732	0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34068551	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34356189	0.82[EUR][1000 genomes]
rs34437689	0.82[EUR][1000 genomes]
rs34479175	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34602534	0.87[EUR][1000 genomes]
rs34814201	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34978749	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35194168	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35257621	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35415402	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4628872	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58688462	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60412145	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61316540	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61979674	0.81[EUR][1000 genomes]
rs61979715	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61979723	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6650487	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6650497	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67170227	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs71419996	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7146042	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
4	nsv1040303	chr14:35040853-35101044	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv542027	chr14:35040853-35101044	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv1038360	chr14:35040853-35152886	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35024400-35056800	Weak transcription	Small Intestine	intestine
2	chr14:35024400-35060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr14:35024400-35066200	Weak transcription	Stomach Mucosa	stomach
4	chr14:35031400-35073400	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr14:35031400-35073400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr14:35031400-35078000	Strong transcription	Primary B cells from peripheral blood	blood
7	chr14:35031600-35059600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:35031600-35074000	Strong transcription	Primary neutrophils fromperipheralblood	blood
9	chr14:35031600-35074000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr14:35031600-35079400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr14:35031800-35063400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr14:35032000-35072600	Strong transcription	Fetal Intestine Small	intestine
13	chr14:35032000-35072600	Strong transcription	Fetal Stomach	stomach
14	chr14:35032000-35078200	Strong transcription	Fetal Muscle Trunk	muscle
15	chr14:35032000-35078600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
16	chr14:35032200-35061600	Weak transcription	Fetal Heart	heart
17	chr14:35032200-35080600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:35033000-35079000	Strong transcription	HepG2	liver
19	chr14:35033200-35061600	Weak transcription	Psoas Muscle	Psoas
20	chr14:35036400-35059200	Weak transcription	Pancreatic Islets	Pancreatic Islet
21	chr14:35040600-35080400	Strong transcription	Duodenum Mucosa	Duodenum
22	chr14:35041200-35073400	Weak transcription	K562	blood
23	chr14:35041600-35080200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr14:35045800-35079000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
25	chr14:35045800-35079400	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr14:35045800-35089200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
27	chr14:35046200-35078400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
28	chr14:35046200-35079600	Strong transcription	Primary T helper cells fromperipheralblood	blood
29	chr14:35046400-35057800	Strong transcription	Brain Germinal Matrix	brain
30	chr14:35046400-35078400	Strong transcription	Dnd41	blood
31	chr14:35046600-35064200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
32	chr14:35046600-35078400	Strong transcription	Fetal Intestine Large	intestine
33	chr14:35047200-35073600	Strong transcription	Thymus	Thymus
34	chr14:35047200-35079400	Strong transcription	Placenta	Placenta
35	chr14:35047600-35057400	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr14:35047600-35058800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
37	chr14:35048200-35075000	Strong transcription	Rectal Mucosa Donor 31	rectum
38	chr14:35048200-35079600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr14:35048400-35079000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
40	chr14:35048600-35077600	Strong transcription	Primary T cells from cord blood	blood
41	chr14:35048600-35079400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
42	chr14:35049000-35078200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr14:35050200-35063200	Strong transcription	Osteobl	bone
44	chr14:35050800-35056800	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr14:35050800-35078000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
46	chr14:35051600-35058800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr14:35051800-35072600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr14:35051800-35078400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
49	chr14:35052000-35059000	Weak transcription	Brain Anterior Caudate	brain
50	chr14:35052000-35059000	Weak transcription	HSMM	muscle

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