Variant report

Variant	rs35415402
Chromosome Location	chr14:35044469-35044470
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:35022324..35025884-chr14:35039151..35046276,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000206588	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11156849	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12050290	0.80[EUR][1000 genomes]
rs12435717	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12586808	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12590540	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12878227	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12878854	0.85[EUR][1000 genomes]
rs12884427	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12884997	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12885352	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12890311	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12895640	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13826	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17524152	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28515732	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34068551	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34356189	0.85[EUR][1000 genomes]
rs34437689	0.85[EUR][1000 genomes]
rs34479175	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs34602534	0.87[EUR][1000 genomes]
rs34814201	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs34978749	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs35091031	0.80[EUR][1000 genomes]
rs35194168	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35257621	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4368076	0.82[EUR][1000 genomes]
rs4628872	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58688462	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60412145	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61316540	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61979674	0.83[EUR][1000 genomes]
rs61979715	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61979723	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6650487	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6650497	0.91[EUR][1000 genomes]
rs67170227	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs71419996	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7146042	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs73236276	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1049048	chr14:34969406-35048672	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
5	nsv977453	chr14:35038000-35045031	Weak transcription Strong transcription Genic enhancers Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1040303	chr14:35040853-35101044	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv542027	chr14:35040853-35101044	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
8	nsv1038360	chr14:35040853-35152886	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35024200-35046200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr14:35024400-35053600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr14:35024400-35056800	Weak transcription	Small Intestine	intestine
4	chr14:35024400-35060600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:35024400-35066200	Weak transcription	Stomach Mucosa	stomach
6	chr14:35031400-35047400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:35031400-35052600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:35031400-35073400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr14:35031400-35073400	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr14:35031400-35078000	Strong transcription	Primary B cells from peripheral blood	blood
11	chr14:35031600-35045000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
12	chr14:35031600-35045200	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr14:35031600-35045200	Strong transcription	Placenta	Placenta
14	chr14:35031600-35047200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr14:35031600-35049800	Strong transcription	Osteobl	bone
16	chr14:35031600-35050600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:35031600-35055800	Strong transcription	Liver	Liver
18	chr14:35031600-35059600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:35031600-35074000	Strong transcription	Primary neutrophils fromperipheralblood	blood
20	chr14:35031600-35074000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr14:35031600-35079400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr14:35031800-35044800	Strong transcription	Primary T helper cells fromperipheralblood	blood
23	chr14:35031800-35044800	Strong transcription	Rectal Mucosa Donor 29	rectum
24	chr14:35031800-35045000	Strong transcription	Dnd41	blood
25	chr14:35031800-35063400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr14:35032000-35045000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr14:35032000-35056000	Strong transcription	Fetal Thymus	thymus
28	chr14:35032000-35072600	Strong transcription	Fetal Intestine Small	intestine
29	chr14:35032000-35072600	Strong transcription	Fetal Stomach	stomach
30	chr14:35032000-35078200	Strong transcription	Fetal Muscle Trunk	muscle
31	chr14:35032000-35078600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
32	chr14:35032200-35061600	Weak transcription	Fetal Heart	heart
33	chr14:35032200-35080600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr14:35032400-35055000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
35	chr14:35033000-35045400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr14:35033000-35079000	Strong transcription	HepG2	liver
37	chr14:35033200-35061600	Weak transcription	Psoas Muscle	Psoas
38	chr14:35033400-35044600	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr14:35034600-35044800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:35034800-35047400	Strong transcription	HUES6 Cell Line	embryonic stem cell
41	chr14:35035600-35051400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr14:35035600-35053400	Weak transcription	Fetal Brain Male	brain
43	chr14:35036000-35045000	Strong transcription	Sigmoid Colon	Sigmoid Colon
44	chr14:35036200-35048400	Weak transcription	Primary hematopoietic stem cells	blood
45	chr14:35036400-35059200	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr14:35036800-35050200	Weak transcription	HSMMtube	muscle
47	chr14:35038400-35046600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr14:35038400-35049200	Weak transcription	Aorta	Aorta
49	chr14:35038600-35051600	Weak transcription	NHLF	lung
50	chr14:35039000-35045000	Strong transcription	Adipose Nuclei	Adipose

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