Variant report

Variant	rs61979674
Chromosome Location	chr14:35018760-35018761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:0)
Chromatin interactive
region (count:25)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:35016922-35021427	IMR90	lung:	n/a	n/a

No data

(count:25 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:35016499..35019288-chr14:35182699..35184219,2	MCF-7	breast:
2	chr14:35016160..35018954-chr14:35320492..35322117,2	MCF-7	breast:
3	chr10:102756163..102758434-chr14:35017700..35019689,2	MCF-7	breast:
4	chr14:34815903..34818513-chr14:35017360..35019871,2	K562	blood:
5	chr14:35018037..35019853-chr6:146055203..146057690,2	MCF-7	breast:
6	chr14:35018077..35020171-chr14:35160382..35163154,2	MCF-7	breast:
7	chr14:35005284..35011388-chr14:35017198..35025900,23	MCF-7	breast:
8	chr14:34797417..34799654-chr14:35017218..35018796,2	K562	blood:
9	chr14:34929752..34932911-chr14:35018706..35021563,3	K562	blood:
10	chr14:35004626..35011116-chr14:35015634..35020787,10	MCF-7	breast:
11	chr14:34882267..34884337-chr14:35018117..35021042,2	K562	blood:
12	chr14:34994005..34996039-chr14:35018273..35019787,2	MCF-7	breast:
13	chr14:34801000..34803505-chr14:35018421..35020509,2	K562	blood:
14	chr14:35017275..35019117-chr14:35456494..35458889,2	MCF-7	breast:
15	chr14:35018167..35021076-chr14:35903929..35905498,2	MCF-7	breast:
16	chr14:35017271..35020208-chr14:35082278..35083991,2	MCF-7	breast:
17	chr14:34800052..34803596-chr14:35017115..35019908,4	MCF-7	breast:
18	chr14:35017489..35019232-chr14:35116363..35118749,2	MCF-7	breast:
19	chr14:34836739..34838554-chr14:35017235..35019391,2	MCF-7	breast:
20	chr14:35017186..35019068-chr14:35256724..35258976,2	MCF-7	breast:
21	chr14:35018094..35020789-chr14:36208643..36210468,2	MCF-7	breast:
22	chr14:35015687..35019377-chr17:57914775..57917596,3	MCF-7	breast:
23	chr14:34930890..34932911-chr14:35017228..35020206,2	K562	blood:
24	chr14:35016252..35019435-chr14:35175626..35179365,3	MCF-7	breast:
25	chr14:35005592..35010362-chr14:35016916..35020262,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000258612	TF binding region
ENSG00000270638	Chromatin interaction
ENSG00000107816	Chromatin interaction
ENSG00000129521	Chromatin interaction
ENSG00000165410	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000112425	Chromatin interaction
ENSG00000129518	Chromatin interaction
ENSG00000165389	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11156849	0.82[EUR][1000 genomes]
rs12050290	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12434523	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12588228	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12588878	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12589576	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12590540	0.83[EUR][1000 genomes]
rs12878227	0.85[EUR][1000 genomes]
rs12878854	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12882703	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12884997	0.84[EUR][1000 genomes]
rs12885352	0.84[EUR][1000 genomes]
rs12894795	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13826	0.82[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17524152	0.80[EUR][1000 genomes]
rs28515732	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34068551	0.84[EUR][1000 genomes]
rs34356189	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34437689	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34479175	0.84[EUR][1000 genomes]
rs35091031	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35194168	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs35257621	0.83[EUR][1000 genomes]
rs35415402	0.83[EUR][1000 genomes]
rs4368076	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4592561	0.82[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4628872	0.84[EUR][1000 genomes]
rs55858014	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56801633	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60412145	0.81[EUR][1000 genomes]
rs61316540	0.84[EUR][1000 genomes]
rs61979715	0.84[EUR][1000 genomes]
rs61981527	0.87[ASN][1000 genomes]
rs61981529	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7158829	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73236276	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040980	chr14:34345018-35255592	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	109 gene(s)	inside rSNPs	diseases
2	nsv1048408	chr14:34958352-35255592	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
3	nsv1049048	chr14:34969406-35048672	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv1053274	chr14:34980184-35020973	Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1037503	chr14:34980184-35027115	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
6	nsv564194	chr14:34985645-35029396	Strong transcription Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases
7	esv3392700	chr14:34989406-35365530	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	85 gene(s)	inside rSNPs	diseases
8	esv2761826	chr14:35009633-35027508	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
9	nsv9132	chr14:35016506-35019740	Flanking Active TSS Active TSS Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:35009000-35033000	Weak transcription	Gastric	stomach
2	chr14:35009600-35022200	Weak transcription	Fetal Intestine Large	intestine
3	chr14:35009600-35023800	Weak transcription	Right Atrium	heart
4	chr14:35017000-35019000	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr14:35017000-35020400	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr14:35017000-35020400	Enhancers	Dnd41	blood
7	chr14:35017200-35019200	Enhancers	Liver	Liver
8	chr14:35017400-35019000	Weak transcription	Fetal Brain Male	brain
9	chr14:35017400-35023200	Weak transcription	Fetal Intestine Small	intestine
10	chr14:35017400-35023400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr14:35017400-35023400	Weak transcription	Fetal Muscle Leg	muscle
12	chr14:35017400-35023400	Weak transcription	Pancreas	Pancrea
13	chr14:35017400-35023400	Weak transcription	A549	lung
14	chr14:35017400-35023400	Weak transcription	K562	blood
15	chr14:35017400-35023600	Weak transcription	Rectal Mucosa Donor 29	rectum
16	chr14:35017400-35023800	Weak transcription	Primary B cells from cord blood	blood
17	chr14:35017400-35023800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:35017400-35023800	Weak transcription	Brain Hippocampus Middle	brain
19	chr14:35017400-35036000	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr14:35017800-35023400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr14:35017800-35023400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:35017800-35023400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr14:35017800-35023800	Weak transcription	Thymus	Thymus
24	chr14:35018000-35019600	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr14:35018000-35019600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr14:35018000-35023200	Weak transcription	Fetal Muscle Trunk	muscle
27	chr14:35018000-35023200	Weak transcription	HepG2	liver
28	chr14:35018000-35023600	Weak transcription	Primary T cells from cord blood	blood
29	chr14:35018000-35023600	Weak transcription	Spleen	Spleen
30	chr14:35018000-35023800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr14:35018200-35019000	Weak transcription	Fetal Thymus	thymus
32	chr14:35018200-35023400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr14:35018200-35023600	Weak transcription	Sigmoid Colon	Sigmoid Colon
34	chr14:35018400-35019200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr14:35018400-35023200	Weak transcription	Hela-S3	cervix
36	chr14:35018400-35023400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:35018400-35023600	Weak transcription	HSMM	muscle
38	chr14:35018400-35023800	Weak transcription	Stomach Smooth Muscle	stomach
39	chr14:35018600-35019400	Enhancers	Monocytes-CD14+_RO01746	blood

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