Variant report

Variant	rs34617407
Chromosome Location	chr3:82787625-82787626
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1032554	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12488855	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12488882	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12492495	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12494700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13070192	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13086095	0.93[ASN][1000 genomes]
rs13091778	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13096806	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097372	0.87[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs13099485	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1496616	0.86[ASN][1000 genomes]
rs17020153	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2029920	0.93[ASN][1000 genomes]
rs2088307	0.93[ASN][1000 genomes]
rs2088309	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34641401	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs36046258	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6548853	0.93[ASN][1000 genomes]
rs6781653	0.93[ASN][1000 genomes]
rs6783313	0.85[ASN][1000 genomes]
rs6792836	0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs71328419	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7621875	1.00[ASN][1000 genomes]
rs9815966	0.96[ASN][1000 genomes]
rs9826203	0.93[ASN][1000 genomes]
rs9831888	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877045	chr3:82728631-82808608	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv963565	chr3:82766875-82790137	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv3415061	chr3:82785462-82789160	Enhancers Weak transcription Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82782400-82792400	Weak transcription	Gastric	stomach
2	chr3:82786200-82789400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr3:82786200-82789600	Weak transcription	Brain Hippocampus Middle	brain
4	chr3:82786200-82789800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:82786400-82789600	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr3:82786400-82789600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr3:82786400-82789600	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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