Variant report
| Variant | rs9815966 |
|---|---|
| Chromosome Location | chr3:82822205-82822206 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:82813887..82816029-chr3:82820671..82822909,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs1032554 | 1.00[ASN][1000 genomes] |
| rs12488855 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12488882 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12492495 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12494700 | 0.96[ASN][1000 genomes] |
| rs13070192 | 0.80[AMR][1000 genomes];0.92[ASN][1000 genomes] |
| rs13086095 | 0.96[ASN][1000 genomes] |
| rs13091778 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13096806 | 0.96[ASN][1000 genomes] |
| rs13097372 | 0.93[ASN][1000 genomes] |
| rs13099485 | 0.96[ASN][1000 genomes] |
| rs1496616 | 0.90[ASN][1000 genomes] |
| rs17020153 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2029920 | 0.96[ASN][1000 genomes] |
| rs2088307 | 0.96[ASN][1000 genomes] |
| rs2088309 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34617407 | 0.96[ASN][1000 genomes] |
| rs34641401 | 1.00[ASN][1000 genomes] |
| rs36046258 | 0.80[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6548853 | 0.96[ASN][1000 genomes] |
| rs6781653 | 0.96[ASN][1000 genomes] |
| rs6783313 | 0.81[ASN][1000 genomes] |
| rs6792836 | 1.00[ASN][1000 genomes] |
| rs71328419 | 0.92[ASN][1000 genomes] |
| rs7621875 | 0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9826203 | 0.96[ASN][1000 genomes] |
| rs9831888 | 0.96[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1013820 | chr3:82175705-82968181 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 11 gene(s) | inside rSNPs | diseases |
| 2 | esv2830308 | chr3:82741198-83269730 | Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:82820400-82823200 | Weak transcription | Aorta | Aorta |
