Variant report

Variant	rs9831888
Chromosome Location	chr3:82857229-82857230
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:3)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:3 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:82856909-82857266	MCF-7	breast:	n/a	n/a
2	POLR2A	chr3:82857016-82857297	MCF-7	breast:	n/a	n/a
3	POLR2A	chr3:82857059-82857303	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr3:82857215-82857265	HCPEpiC	choroid plexus:	n/a
2	chr3:82857215-82857265	ECC-1	luminal epithelium:	n/a
3	chr3:82857215-82857265	HEK293	kidney:	embryo
4	chr3:82857215-82857265	AG04449	skin:	fetal
5	chr3:82857215-82857265	HIPEpiC	eye:	n/a
6	chr3:82857215-82857265	BJ	skin:	n/a
7	chr3:82857215-82857265	GM19239	blood:	n/a
8	chr3:82857215-82857265	PrEC	prostate:	n/a
9	chr3:82857215-82857265	MCF-7	breast:	n/a
10	chr3:82857215-82857265	HL-60	blood:	n/a
11	chr3:82857215-82857265	Hepatocyte	liver:	n/a
12	chr3:82857215-82857265	U87	brain:	n/a
13	chr3:82857215-82857265	AG09319	gingival:	n/a
14	chr3:82857215-82857265	SK-N-SH_RA	brain:	n/a
15	chr3:82857215-82857265	HCM	heart:	n/a
16	chr3:82857215-82857265	Jurkat	blood:	n/a
17	chr3:82857215-82857265	NH-A	brain:	n/a
18	chr3:82857215-82857265	NHBE	bronchial:	n/a
19	chr3:82857215-82857265	SK-N-SH	brain:	n/a
20	chr3:82857215-82857265	HNPCEpiC	eye:	n/a
21	chr3:82857215-82857265	SK-N-MC	brain:	n/a
22	chr3:82857215-82857265	NHDF-neo	bronchial:	n/a
23	chr3:82857215-82857265	T-47D	breast:	n/a
24	chr3:82857215-82857265	CMK	blood:	n/a
25	chr3:82857215-82857265	HAEpiC	amniotic membrane:	n/a
26	chr3:82857215-82857265	BE2_C	brain:	n/a
27	chr3:82857215-82857265	PFSK-1	brain:	n/a
28	chr3:82857215-82857265	HRE	kidney:	n/a
29	chr3:82857215-82857265	HEEpiC	esophagus:	n/a
30	chr3:82857215-82857265	Caco-2	colon:	n/a
31	chr3:82857215-82857265	GM12891	blood:	n/a
32	chr3:82857215-82857265	A549	lung:	n/a
33	chr3:82857215-82857265	HCT-116	colon:	n/a
34	chr3:82857215-82857265	AG04450	lung:	fetal
35	chr3:82857215-82857265	SKMC	muscle:	n/a
36	chr3:82857215-82857265	AoSMC	blood vessel:	n/a
37	chr3:82857215-82857265	HRCEpiC	kidney:	n/a
38	chr3:82857215-82857265	HMEC	breast:	n/a
39	chr3:82857215-82857265	AG09309	skin:	n/a
40	chr3:82857215-82857265	K562	blood:	n/a
41	chr3:82857215-82857265	GM06990	blood:	n/a
42	chr3:82857215-82857265	IMR90	lung:	fetal
43	chr3:82857215-82857265	HUVEC	blood vessel:	n/a
44	chr3:82857215-82857265	Hela-S3	cervix:	n/a
45	chr3:82857215-82857265	ProgFib	skin:	n/a
46	chr3:82857215-82857265	GM12878	blood:	n/a
47	chr3:82857215-82857265	RPTEC	kidney:	n/a
48	chr3:82857215-82857265	ovcar-3	ovarian:	n/a
49	chr3:82857215-82857265	AG10803	skin:	n/a
50	chr3:82857215-82857265	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
CYP51A1P1	TF binding region
CYP51A1P1	CpG island

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1032554	0.96[ASN][1000 genomes]
rs12488855	0.96[ASN][1000 genomes]
rs12488882	0.96[ASN][1000 genomes]
rs12492495	0.96[ASN][1000 genomes]
rs12494700	0.93[ASN][1000 genomes]
rs13070192	0.89[ASN][1000 genomes]
rs13086095	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13091778	0.96[ASN][1000 genomes]
rs13096806	0.93[ASN][1000 genomes]
rs13097372	0.89[ASN][1000 genomes]
rs13099485	0.93[ASN][1000 genomes]
rs1496616	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17020153	0.96[ASN][1000 genomes]
rs2029920	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088307	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2088309	0.96[ASN][1000 genomes]
rs34617407	0.93[ASN][1000 genomes]
rs34641401	0.96[ASN][1000 genomes]
rs36046258	0.96[ASN][1000 genomes]
rs6548853	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6781653	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6792836	0.96[ASN][1000 genomes]
rs71328419	0.89[ASN][1000 genomes]
rs7621875	0.93[ASN][1000 genomes]
rs9815966	0.96[ASN][1000 genomes]
rs9826203	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	esv1805592	chr3:82853590-82913445	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	esv1814571	chr3:82857229-82910711	ZNF genes & repeats Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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