Variant report

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1032554	0.96[ASN][1000 genomes]
rs12488855	0.96[ASN][1000 genomes]
rs12488882	0.96[ASN][1000 genomes]
rs12492495	0.96[ASN][1000 genomes]
rs12494700	1.00[ASN][1000 genomes]
rs13070192	0.89[ASN][1000 genomes]
rs13086095	0.93[ASN][1000 genomes]
rs13091778	0.96[ASN][1000 genomes]
rs13096806	1.00[ASN][1000 genomes]
rs13097372	0.89[ASN][1000 genomes]
rs13099485	1.00[ASN][1000 genomes]
rs1496616	0.86[ASN][1000 genomes]
rs17020153	0.96[ASN][1000 genomes]
rs2029920	0.93[ASN][1000 genomes]
rs2088307	0.93[ASN][1000 genomes]
rs2088309	0.96[ASN][1000 genomes]
rs34617407	1.00[ASN][1000 genomes]
rs34641401	0.96[ASN][1000 genomes]
rs36046258	0.96[ASN][1000 genomes]
rs6548853	0.93[ASN][1000 genomes]
rs6781653	0.93[ASN][1000 genomes]
rs6783313	0.85[ASN][1000 genomes]
rs6792836	0.96[ASN][1000 genomes]
rs71328419	0.96[ASN][1000 genomes]
rs9815966	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9826203	0.93[ASN][1000 genomes]
rs9831888	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1013820	chr3:82175705-82968181	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv834750	chr3:82645025-82802783	Enhancers Bivalent Enhancer Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv877045	chr3:82728631-82808608	Enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2830308	chr3:82741198-83269730	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv963565	chr3:82766875-82790137	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7621875	ABI3BP	trans	brain	seeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:82782400-82792400	Weak transcription	Gastric	stomach
2	chr3:82786200-82789800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr3:82788800-82790200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr3:82789400-82790000	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr3:82789400-82790200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:82789600-82790000	Enhancers	H1 Cell Line	embryonic stem cell
7	chr3:82789600-82790000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr3:82789600-82790000	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr3:82789600-82790200	Enhancers	Brain Hippocampus Middle	brain

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