Variant report

Variant	rs34634785
Chromosome Location	chr10:43976752-43976753
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43902685..43904654-chr10:43976459..43978069,2	MCF-7	breast:
2	chr10:43930707..43932404-chr10:43975241..43977746,2	K562	blood:
3	chr10:43976615..43979208-chr10:43982214..43983793,2	K562	blood:

Variant related genes	Relation type
ENSG00000243660	Chromatin interaction
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11548184	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11813634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814130	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11816311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817218	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11817723	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11817841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11819010	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12354765	0.81[ASN][1000 genomes]
rs12569974	0.81[ASN][1000 genomes]
rs12570067	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12570790	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571047	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12571447	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12571906	1.00[AMR][1000 genomes]
rs12571914	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12572226	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12572292	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs41306552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41307500	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55659835	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57862979	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59770090	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60057912	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60274910	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs61113633	0.85[ASN][1000 genomes]
rs61858960	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858962	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858963	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858964	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858965	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858966	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61858967	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858989	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858996	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858997	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61858998	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61858999	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859003	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859005	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859006	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859048	0.83[EUR][1000 genomes]
rs61859049	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859050	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859051	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859052	0.85[EUR][1000 genomes]
rs61859054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859058	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859967	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859968	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860000	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860003	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860005	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860008	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61860013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61860885	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860886	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860887	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860890	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1043746	chr10:43940898-43977155	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43952000-43977200	Weak transcription	HSMMtube	muscle
2	chr10:43957800-43977200	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr10:43967400-43978600	Weak transcription	Pancreas	Pancrea
4	chr10:43968800-43977200	Weak transcription	Brain Hippocampus Middle	brain
5	chr10:43969000-43977000	Weak transcription	Brain Anterior Caudate	brain
6	chr10:43969400-43977200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr10:43969600-43977200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr10:43969800-43978200	Weak transcription	Fetal Kidney	kidney
9	chr10:43972200-43976800	Weak transcription	Stomach Smooth Muscle	stomach
10	chr10:43974800-43977200	Weak transcription	Gastric	stomach
11	chr10:43974800-43982600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr10:43975000-43977200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr10:43975200-43977200	Weak transcription	Primary B cells from cord blood	blood
14	chr10:43975400-43977000	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr10:43976000-43977200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr10:43976000-43979200	ZNF genes & repeats	Liver	Liver
17	chr10:43976200-43977200	Weak transcription	Brain Angular Gyrus	brain
18	chr10:43976200-43978600	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr10:43976200-43978600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr10:43976200-43978600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
21	chr10:43976200-43978800	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
22	chr10:43976400-43977200	ZNF genes & repeats	Primary T cells from cord blood	blood
23	chr10:43976400-43977200	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr10:43976400-43977400	ZNF genes & repeats	Thymus	Thymus
25	chr10:43976400-43977600	ZNF genes & repeats	Aorta	Aorta
26	chr10:43976400-43978000	ZNF genes & repeats	Colon Smooth Muscle	Colon
27	chr10:43976400-43978200	ZNF genes & repeats	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr10:43976400-43978400	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr10:43976400-43978400	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
30	chr10:43976400-43978400	ZNF genes & repeats	Adipose Nuclei	Adipose
31	chr10:43976400-43978600	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast
32	chr10:43976400-43978600	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
33	chr10:43976400-43978600	ZNF genes & repeats	Ovary	ovary
34	chr10:43976400-43978800	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr10:43976600-43978200	ZNF genes & repeats	Primary T helper naive cells fromperipheralblood	blood
36	chr10:43976600-43978600	ZNF genes & repeats	Duodenum Mucosa	Duodenum

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