Variant report

Variant	rs41307500
Chromosome Location	chr10:43871158-43871159
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:7)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:7 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43870160..43871851-chr10:43949319..43951127,2	K562	blood:
2	chr10:43871156..43873065-chr10:43900676..43903339,2	MCF-7	breast:
3	chr10:43858742..43859363-chr10:43870790..43871751,3	MCF-7	breast:
4	chr10:43867647..43875264-chr10:43900659..43906151,11	MCF-7	breast:
5	chr10:43868700..43874062-chr10:43890607..43893448,6	MCF-7	breast:
6	chr10:43868968..43875759-chr10:43890269..43893335,11	MCF-7	breast:
7	chr10:43853521..43859723-chr10:43870896..43875408,11	MCF-7	breast:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ZNF487P-6	chr10:43871143-43871182	NONHSAT012958

No data

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 78 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs11548184	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813634	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11813872	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11814130	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11816311	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11817218	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11817723	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817841	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11818610	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11819010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12354765	0.96[ASN][1000 genomes]
rs12569974	1.00[AFR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12570067	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12570790	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12571047	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571447	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12571906	1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12571914	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12572226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12572292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34634785	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs41306552	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55659835	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs57862979	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59770090	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60057912	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs60274910	0.83[AMR][1000 genomes]
rs61113633	0.85[ASN][1000 genomes]
rs61858960	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858962	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858966	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61858967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858989	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858996	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858997	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858998	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61858999	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859003	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859005	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859006	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859049	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859050	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859051	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859054	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859055	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859056	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859058	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859962	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61859963	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61859965	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61859966	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61859967	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61859968	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61859970	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860000	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860003	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860005	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860008	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860009	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860012	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61860013	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860014	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860882	1.00[AFR][1000 genomes]
rs61860883	1.00[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs61860885	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860887	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860890	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
7	nsv521283	chr10:43866528-43871998	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43861200-43872400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:43867200-43876200	Weak transcription	Hela-S3	cervix
4	chr10:43868200-43873400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:43868600-43872800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr10:43869000-43871200	Enhancers	Brain Hippocampus Middle	brain
7	chr10:43869000-43872200	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr10:43869000-43872800	Weak transcription	Gastric	stomach
9	chr10:43869000-43880400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr10:43869200-43872400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr10:43869200-43872400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr10:43869200-43882000	Weak transcription	Left Ventricle	heart
13	chr10:43869400-43872600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr10:43869400-43880200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:43869600-43872600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr10:43869600-43872800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr10:43869600-43873800	Enhancers	Placenta	Placenta
18	chr10:43869800-43878600	Weak transcription	A549	lung
19	chr10:43870000-43871600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr10:43870000-43881200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
21	chr10:43870000-43882000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr10:43870200-43881000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr10:43870200-43882000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr10:43870200-43882000	Weak transcription	Brain Substantia Nigra	brain
25	chr10:43870400-43871200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr10:43870400-43880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr10:43870400-43881000	Weak transcription	Primary T helper cells PMA-I stimulated	--
28	chr10:43870400-43881600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr10:43870400-43882000	Weak transcription	Brain Angular Gyrus	brain
30	chr10:43870600-43872200	Enhancers	Lung	lung
31	chr10:43870800-43871400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
32	chr10:43870800-43871600	Enhancers	Fetal Muscle Leg	muscle
33	chr10:43870800-43873800	Enhancers	Placenta Amnion	Placenta Amnion
34	chr10:43871000-43871400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
35	chr10:43871000-43871400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr10:43871000-43871400	Enhancers	Stomach Mucosa	stomach
37	chr10:43871000-43871600	Enhancers	HUES6 Cell Line	embryonic stem cell
38	chr10:43871000-43871800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
39	chr10:43871000-43880400	Weak transcription	Brain Anterior Caudate	brain

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