Variant report

Variant	rs61860008
Chromosome Location	chr10:44002461-44002462
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 75 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11548184	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11813634	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814130	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11816311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817218	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11817723	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11817841	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11818610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11819010	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12354765	0.81[ASN][1000 genomes]
rs12569974	0.81[ASN][1000 genomes]
rs12570067	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12570790	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571047	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12571447	0.85[ASN][1000 genomes]
rs12571906	1.00[AMR][1000 genomes]
rs12571914	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12572226	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12572292	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34634785	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41306552	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41307500	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55659835	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57862979	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs59770090	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60057912	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60274910	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61113633	0.85[ASN][1000 genomes]
rs61858960	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858962	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858963	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858964	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858965	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858966	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61858967	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858989	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858996	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858997	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858998	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858999	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859003	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859005	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859006	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859049	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859050	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859051	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859058	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859962	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859965	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859966	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859967	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859968	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859970	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860000	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860003	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860005	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860012	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61860013	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860014	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61860885	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860886	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860887	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860890	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	esv1797129	chr10:43996713-44002994	ZNF genes & repeats Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases
5	esv275081	chr10:43996713-44018932	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	esv1816330	chr10:43999354-44002994	Weak transcription Enhancers ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43987400-44003200	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr10:43998000-44005000	Weak transcription	Brain Hippocampus Middle	brain
3	chr10:44000400-44002800	Weak transcription	Ovary	ovary
4	chr10:44002200-44003000	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
5	chr10:44002400-44002800	ZNF genes & repeats	Brain Cingulate Gyrus	brain

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