Variant report

Variant	rs60057912
Chromosome Location	chr10:43978971-43978972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43971469..43973705-chr10:43977289..43979716,2	K562	blood:
2	chr10:43970982..43973705-chr10:43978216..43981135,2	K562	blood:
3	chr10:43976615..43979208-chr10:43982214..43983793,2	K562	blood:

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs11548184	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11813634	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11813872	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11814130	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11816311	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11817218	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11817723	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs11817841	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs11818610	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11819010	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12354765	0.81[ASN][1000 genomes]
rs12569974	0.81[ASN][1000 genomes]
rs12570067	0.83[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs12570790	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12571047	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12571447	0.80[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12571906	1.00[AMR][1000 genomes]
rs12571914	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12572226	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs12572292	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs34634785	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41306552	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41307500	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs55659835	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56305563	0.90[AFR][1000 genomes]
rs57050417	0.90[AFR][1000 genomes]
rs57862979	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58052353	0.90[AFR][1000 genomes]
rs59615405	0.90[AFR][1000 genomes]
rs59737279	0.81[AFR][1000 genomes]
rs59770090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59946114	0.90[AFR][1000 genomes]
rs60274910	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61113633	0.85[ASN][1000 genomes]
rs61858960	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858962	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858963	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858964	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858965	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858966	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs61858967	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858989	0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858996	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61858997	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61858998	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61858999	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859003	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859005	1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs61859006	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859048	0.81[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs61859049	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859050	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859051	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859052	0.90[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs61859054	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859055	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859056	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs61859962	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859963	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859965	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859966	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859967	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859968	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61859970	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860000	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860003	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860005	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860008	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860009	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61860012	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61860013	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61860014	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs61860885	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860886	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860887	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs61860890	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs74137733	0.90[AFR][1000 genomes]
rs74137734	0.90[AFR][1000 genomes]
rs74137735	0.90[AFR][1000 genomes]
rs74137736	0.90[AFR][1000 genomes]
rs74137737	0.81[AFR][1000 genomes]
rs74137738	0.90[AFR][1000 genomes]
rs74137739	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43974800-43982600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr10:43976000-43979200	ZNF genes & repeats	Liver	Liver
3	chr10:43977000-43979000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
4	chr10:43978400-43980600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:43978400-43980800	Weak transcription	Psoas Muscle	Psoas
6	chr10:43978600-43981200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr10:43978600-43982400	Weak transcription	Brain Angular Gyrus	brain

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