Variant report

Variant	rs74137734
Chromosome Location	chr10:43957154-43957155
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43788471..43789248-chr10:43956837..43957692,2	MCF-7	breast:
2	chr10:43889454..43895016-chr10:43953657..43957344,5	MCF-7	breast:
3	chr10:43692631..43693170-chr10:43957145..43957979,2	K562	blood:
4	chr10:43843618..43844595-chr10:43957020..43957977,4	K562	blood:
5	chr10:43899870..43905980-chr10:43953401..43957689,7	MCF-7	breast:
6	chr10:43902834..43905177-chr10:43955557..43957736,3	MCF-7	breast:
7	chr10:43901766..43904135-chr10:43956067..43959017,3	K562	blood:
8	chr10:43890727..43894118-chr10:43955910..43958859,5	K562	blood:
9	chr10:43761240..43761910-chr10:43957026..43957545,2	MCF-7	breast:
10	chr10:43788712..43789316-chr10:43957074..43958273,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12570790	0.90[AFR][1000 genomes]
rs12571914	0.90[AFR][1000 genomes]
rs55659835	0.90[AFR][1000 genomes]
rs55957438	0.89[AFR][1000 genomes]
rs55969732	1.00[EUR][1000 genomes]
rs55984046	1.00[EUR][1000 genomes]
rs56067782	1.00[EUR][1000 genomes]
rs56305563	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56706302	1.00[EUR][1000 genomes]
rs57050417	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57169447	1.00[EUR][1000 genomes]
rs58036139	1.00[EUR][1000 genomes]
rs58052353	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58345794	1.00[EUR][1000 genomes]
rs58594005	1.00[EUR][1000 genomes]
rs58829593	0.89[AFR][1000 genomes]
rs59615405	1.00[AFR][1000 genomes]
rs59737279	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59770090	0.90[AFR][1000 genomes]
rs59946114	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60057912	0.90[AFR][1000 genomes]
rs60274910	0.90[AFR][1000 genomes]
rs61859048	0.90[AFR][1000 genomes]
rs61859049	0.90[AFR][1000 genomes]
rs61859050	0.90[AFR][1000 genomes]
rs61859051	0.90[AFR][1000 genomes]
rs61859052	1.00[AFR][1000 genomes]
rs61859058	0.90[AFR][1000 genomes]
rs61859967	0.90[AFR][1000 genomes]
rs61859968	0.90[AFR][1000 genomes]
rs73267969	1.00[EUR][1000 genomes]
rs74135720	1.00[EUR][1000 genomes]
rs74135736	1.00[EUR][1000 genomes]
rs74137729	1.00[EUR][1000 genomes]
rs74137730	1.00[EUR][1000 genomes]
rs74137733	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137735	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137736	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137737	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137738	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137739	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137740	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1043746	chr10:43940898-43977155	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43951800-43957400	Weak transcription	Fetal Kidney	kidney
2	chr10:43952000-43957200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr10:43952000-43957600	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr10:43952000-43957600	Weak transcription	Brain Anterior Caudate	brain
5	chr10:43952000-43957600	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:43952000-43957600	Weak transcription	Skeletal Muscle Female	skeletal muscle
7	chr10:43952000-43957600	Weak transcription	Hela-S3	cervix
8	chr10:43952000-43960000	Weak transcription	Left Ventricle	heart
9	chr10:43952000-43972600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr10:43952000-43973200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr10:43952000-43977200	Weak transcription	HSMMtube	muscle
12	chr10:43952200-43957200	Weak transcription	Fetal Intestine Small	intestine
13	chr10:43952200-43957400	Weak transcription	Brain Cingulate Gyrus	brain
14	chr10:43952200-43957400	Weak transcription	Brain Hippocampus Middle	brain
15	chr10:43952200-43957600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr10:43952200-43957600	Weak transcription	Adipose Nuclei	Adipose
17	chr10:43952200-43957600	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr10:43952200-43957600	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr10:43952200-43961600	Weak transcription	Rectal Smooth Muscle	rectum
20	chr10:43952200-43967800	Weak transcription	Right Atrium	heart
21	chr10:43952200-43975200	Weak transcription	Fetal Stomach	stomach
22	chr10:43952400-43957200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr10:43952400-43976200	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr10:43952600-43957200	Weak transcription	Primary B cells from peripheral blood	blood
25	chr10:43952600-43957200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
26	chr10:43952600-43957200	Weak transcription	Dnd41	blood
27	chr10:43952600-43957800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
28	chr10:43952600-43967400	Weak transcription	Fetal Muscle Leg	muscle
29	chr10:43952800-43957200	Weak transcription	Primary T cells fromperipheralblood	blood
30	chr10:43952800-43957200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
31	chr10:43952800-43957200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr10:43952800-43957400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
33	chr10:43952800-43957400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr10:43952800-43957600	Weak transcription	Primary T helper cells fromperipheralblood	blood
35	chr10:43952800-43957600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
36	chr10:43952800-43957600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr10:43953000-43957400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr10:43954400-43957400	Weak transcription	Primary T helper cells PMA-I stimulated	--
39	chr10:43954400-43957400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
40	chr10:43954400-43960400	Weak transcription	Primary T cells from cord blood	blood
41	chr10:43954600-43957600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
42	chr10:43954800-43959200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr10:43956200-43957200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr10:43956400-43957800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr10:43956800-43957200	Enhancers	NHEK	skin
46	chr10:43956800-43957600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr10:43956800-43957600	Enhancers	HepG2	liver
48	chr10:43957000-43957600	Enhancers	K562	blood

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