Variant report

Variant	rs73267969
Chromosome Location	chr10:43870804-43870805
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr10:43870160..43871851-chr10:43949319..43951127,2	K562	blood:
2	chr10:43858742..43859363-chr10:43870790..43871751,3	MCF-7	breast:
3	chr10:43867647..43875264-chr10:43900659..43906151,11	MCF-7	breast:
4	chr10:43868700..43874062-chr10:43890607..43893448,6	MCF-7	breast:
5	chr10:43868968..43875759-chr10:43890269..43893335,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs55969732	1.00[EUR][1000 genomes]
rs55984046	1.00[EUR][1000 genomes]
rs56067782	1.00[EUR][1000 genomes]
rs56305563	1.00[EUR][1000 genomes]
rs56706302	1.00[EUR][1000 genomes]
rs57050417	1.00[EUR][1000 genomes]
rs57169447	1.00[EUR][1000 genomes]
rs58036139	1.00[EUR][1000 genomes]
rs58052353	1.00[EUR][1000 genomes]
rs58345794	1.00[EUR][1000 genomes]
rs58594005	1.00[EUR][1000 genomes]
rs59737279	1.00[EUR][1000 genomes]
rs59946114	1.00[EUR][1000 genomes]
rs74135720	1.00[EUR][1000 genomes]
rs74135736	1.00[EUR][1000 genomes]
rs74137729	1.00[EUR][1000 genomes]
rs74137730	1.00[EUR][1000 genomes]
rs74137733	1.00[EUR][1000 genomes]
rs74137734	1.00[EUR][1000 genomes]
rs74137735	1.00[EUR][1000 genomes]
rs74137736	1.00[EUR][1000 genomes]
rs74137737	1.00[EUR][1000 genomes]
rs74137738	1.00[EUR][1000 genomes]
rs74137739	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
4	nsv1035873	chr10:43721143-43873664	Flanking Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
6	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
7	nsv521283	chr10:43866528-43871998	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43858600-43891000	Weak transcription	Right Atrium	heart
2	chr10:43861200-43872400	Weak transcription	Fetal Intestine Small	intestine
3	chr10:43867200-43876200	Weak transcription	Hela-S3	cervix
4	chr10:43868200-43873400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
5	chr10:43868400-43871000	Enhancers	Brain Anterior Caudate	brain
6	chr10:43868600-43872800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr10:43869000-43871000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr10:43869000-43871200	Enhancers	Brain Hippocampus Middle	brain
9	chr10:43869000-43872200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr10:43869000-43872800	Weak transcription	Gastric	stomach
11	chr10:43869000-43880400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr10:43869200-43872400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr10:43869200-43872400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr10:43869200-43882000	Weak transcription	Left Ventricle	heart
15	chr10:43869400-43871000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:43869400-43872600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr10:43869400-43880200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr10:43869600-43871000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr10:43869600-43872600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr10:43869600-43872800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr10:43869600-43873800	Enhancers	Placenta	Placenta
22	chr10:43869800-43878600	Weak transcription	A549	lung
23	chr10:43870000-43871600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr10:43870000-43881200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr10:43870000-43882000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr10:43870200-43881000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
27	chr10:43870200-43882000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr10:43870200-43882000	Weak transcription	Brain Substantia Nigra	brain
29	chr10:43870400-43871200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr10:43870400-43880000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
31	chr10:43870400-43881000	Weak transcription	Primary T helper cells PMA-I stimulated	--
32	chr10:43870400-43881600	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr10:43870400-43882000	Weak transcription	Brain Angular Gyrus	brain
34	chr10:43870600-43872200	Enhancers	Lung	lung
35	chr10:43870800-43871400	Bivalent Enhancer	Fetal Muscle Trunk	muscle
36	chr10:43870800-43871600	Enhancers	Fetal Muscle Leg	muscle
37	chr10:43870800-43873800	Enhancers	Placenta Amnion	Placenta Amnion

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