Variant report

Variant	rs59946114
Chromosome Location	chr10:43973604-43973605
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43971469..43973705-chr10:43977289..43979716,2	K562	blood:
2	chr10:43970982..43973705-chr10:43978216..43981135,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs12570790	0.90[AFR][1000 genomes]
rs12571914	0.90[AFR][1000 genomes]
rs55659835	0.90[AFR][1000 genomes]
rs55957438	0.89[AFR][1000 genomes]
rs55969732	1.00[EUR][1000 genomes]
rs55984046	1.00[EUR][1000 genomes]
rs56067782	1.00[EUR][1000 genomes]
rs56305563	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56706302	1.00[EUR][1000 genomes]
rs57050417	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57169447	1.00[EUR][1000 genomes]
rs58036139	1.00[EUR][1000 genomes]
rs58052353	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58345794	1.00[EUR][1000 genomes]
rs58594005	1.00[EUR][1000 genomes]
rs58829593	0.89[AFR][1000 genomes]
rs59615405	1.00[AFR][1000 genomes]
rs59737279	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59770090	0.90[AFR][1000 genomes]
rs60057912	0.90[AFR][1000 genomes]
rs60274910	0.90[AFR][1000 genomes]
rs61859048	0.90[AFR][1000 genomes]
rs61859049	0.90[AFR][1000 genomes]
rs61859050	0.90[AFR][1000 genomes]
rs61859051	0.90[AFR][1000 genomes]
rs61859052	1.00[AFR][1000 genomes]
rs61859058	0.90[AFR][1000 genomes]
rs61859967	0.90[AFR][1000 genomes]
rs61859968	0.90[AFR][1000 genomes]
rs73267969	1.00[EUR][1000 genomes]
rs74135720	1.00[EUR][1000 genomes]
rs74135736	1.00[EUR][1000 genomes]
rs74137729	1.00[EUR][1000 genomes]
rs74137730	1.00[EUR][1000 genomes]
rs74137733	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137734	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137735	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137736	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137737	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137738	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137739	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs74137740	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
2	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
3	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
4	nsv1043746	chr10:43940898-43977155	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43952000-43977200	Weak transcription	HSMMtube	muscle
2	chr10:43952200-43975200	Weak transcription	Fetal Stomach	stomach
3	chr10:43952400-43976200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr10:43957800-43976600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr10:43957800-43977200	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr10:43962800-43976400	Weak transcription	Primary T cells from cord blood	blood
7	chr10:43966600-43976400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr10:43967000-43976400	Weak transcription	Aorta	Aorta
9	chr10:43967400-43978600	Weak transcription	Pancreas	Pancrea
10	chr10:43968000-43976400	Weak transcription	Ovary	ovary
11	chr10:43968200-43974800	Weak transcription	Fetal Intestine Small	intestine
12	chr10:43968800-43977200	Weak transcription	Brain Hippocampus Middle	brain
13	chr10:43969000-43977000	Weak transcription	Brain Anterior Caudate	brain
14	chr10:43969400-43977200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr10:43969600-43977200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:43969800-43978200	Weak transcription	Fetal Kidney	kidney
17	chr10:43971200-43976400	Weak transcription	Colon Smooth Muscle	Colon
18	chr10:43971400-43974800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr10:43972000-43974800	Weak transcription	Primary B cells from cord blood	blood
20	chr10:43972200-43976400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
21	chr10:43972200-43976400	Weak transcription	Adipose Nuclei	Adipose
22	chr10:43972200-43976800	Weak transcription	Stomach Smooth Muscle	stomach
23	chr10:43972400-43976000	Weak transcription	Liver	Liver

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