Variant report

Variant	rs58829593
Chromosome Location	chr10:44004534-44004535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55957438	1.00[AFR][1000 genomes]
rs56305563	0.89[AFR][1000 genomes]
rs57050417	0.89[AFR][1000 genomes]
rs58052353	0.89[AFR][1000 genomes]
rs59615405	0.89[AFR][1000 genomes]
rs59946114	0.89[AFR][1000 genomes]
rs61859052	0.89[AFR][1000 genomes]
rs74137733	0.89[AFR][1000 genomes]
rs74137734	0.89[AFR][1000 genomes]
rs74137735	0.89[AFR][1000 genomes]
rs74137736	0.89[AFR][1000 genomes]
rs74137738	0.89[AFR][1000 genomes]
rs74137739	0.89[AFR][1000 genomes]
rs74137740	1.00[AFR][1000 genomes]
rs74137741	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046236	chr10:43968075-44012933	ZNF genes & repeats Weak transcription Strong transcription Enhancers	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv1051325	chr10:43988273-44022473	ZNF genes & repeats Weak transcription Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv275081	chr10:43996713-44018932	Weak transcription ZNF genes & repeats Enhancers	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43998000-44005000	Weak transcription	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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