Variant report

Variant	rs74137730
Chromosome Location	chr10:43932768-43932769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr10:43903244..43904543-chr10:43931320..43932838,6	Hela-S3	cervix:
2	chr10:43889891..43893674-chr10:43930869..43934431,5	MCF-7	breast:
3	chr10:43930579..43934633-chr10:43949587..43954210,8	K562	blood:
4	chr10:43912793..43917262-chr10:43929806..43934635,10	MCF-7	breast:
5	chr10:43761779..43764546-chr10:43932522..43934779,2	K562	blood:
6	chr10:43932113..43932937-chr12:57081412..57082279,2	Hela-S3	cervix:
7	chr10:43932388..43932972-chr6:26157700..26158476,2	Hela-S3	cervix:
8	chr10:43932196..43932833-chr19:18433317..18434316,2	Hela-S3	cervix:
9	chr10:43901784..43908257-chr10:43928243..43934263,17	MCF-7	breast:
10	chr10:43915403..43918859-chr10:43929644..43933431,7	K562	blood:
11	chr1:45987496..45988124-chr10:43931979..43932884,2	Hela-S3	cervix:
12	chr10:43901370..43906375-chr10:43928042..43934083,16	MCF-7	breast:
13	chr10:43932039..43932845-chr11:114166493..114167438,2	Hela-S3	cervix:
14	chr10:43914713..43918981-chr10:43928825..43933676,11	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000130520	Chromatin interaction
ENSG00000169813	Chromatin interaction
ENSG00000198915	Chromatin interaction
ENSG00000230555	Chromatin interaction
ENSG00000117450	Chromatin interaction
ENSG00000221400	Chromatin interaction
ENSG00000166741	Chromatin interaction
ENSG00000252532	Chromatin interaction
ENSG00000158373	Chromatin interaction
ENSG00000110958	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs28845279	1.00[AMR][1000 genomes]
rs55969732	1.00[EUR][1000 genomes]
rs55984046	1.00[EUR][1000 genomes]
rs56067782	1.00[EUR][1000 genomes]
rs56305563	1.00[EUR][1000 genomes]
rs56706302	1.00[EUR][1000 genomes]
rs57050417	1.00[EUR][1000 genomes]
rs57169447	1.00[EUR][1000 genomes]
rs58036139	1.00[EUR][1000 genomes]
rs58052353	1.00[EUR][1000 genomes]
rs58345794	1.00[EUR][1000 genomes]
rs58594005	1.00[EUR][1000 genomes]
rs59737279	1.00[EUR][1000 genomes]
rs59946114	1.00[EUR][1000 genomes]
rs73267969	1.00[EUR][1000 genomes]
rs74135720	1.00[EUR][1000 genomes]
rs74135736	1.00[EUR][1000 genomes]
rs74137729	1.00[EUR][1000 genomes]
rs74137733	1.00[EUR][1000 genomes]
rs74137734	1.00[EUR][1000 genomes]
rs74137735	1.00[EUR][1000 genomes]
rs74137736	1.00[EUR][1000 genomes]
rs74137737	1.00[EUR][1000 genomes]
rs74137738	1.00[EUR][1000 genomes]
rs74137739	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
2	nsv895087	chr10:43783339-43982390	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	73 gene(s)	inside rSNPs	diseases
3	nsv831842	chr10:43846541-43987501	Strong transcription Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	69 gene(s)	inside rSNPs	diseases
4	nsv895088	chr10:43871999-44003101	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
5	nsv825354	chr10:43883418-43949936	Flanking Active TSS Active TSS Enhancers Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	66 gene(s)	inside rSNPs	diseases
6	nsv825356	chr10:43893080-43946515	Flanking Active TSS Active TSS Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	63 gene(s)	inside rSNPs	diseases
7	esv3448813	chr10:43919995-43950867	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43930400-43933000	Active TSS	Hela-S3	cervix
2	chr10:43930600-43933000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
3	chr10:43930800-43933200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr10:43930800-43933200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr10:43931000-43932800	Active TSS	Brain Hippocampus Middle	brain
6	chr10:43931000-43932800	Active TSS	NHEK	skin
7	chr10:43931000-43933000	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr10:43931000-43933000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr10:43931000-43933000	Active TSS	HSMM	muscle
10	chr10:43931000-43933200	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr10:43931000-43933200	Active TSS	A549	lung
12	chr10:43931200-43932800	Active TSS	Liver	Liver
13	chr10:43931200-43932800	Active TSS	Duodenum Mucosa	Duodenum
14	chr10:43931200-43932800	Active TSS	Stomach Smooth Muscle	stomach
15	chr10:43931200-43932800	Active TSS	Dnd41	blood
16	chr10:43931200-43932800	Active TSS	HMEC	breast
17	chr10:43931200-43932800	Active TSS	K562	blood
18	chr10:43931200-43933200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr10:43931200-43933200	Active TSS	Brain Inferior Temporal Lobe	brain
20	chr10:43931200-43933200	Active TSS	Rectal Mucosa Donor 29	rectum
21	chr10:43931400-43932800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr10:43931400-43932800	Active TSS	Rectal Smooth Muscle	rectum
23	chr10:43931400-43933000	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr10:43931400-43933000	Active TSS	Psoas Muscle	Psoas
25	chr10:43931400-43933200	Active TSS	HUES64 Cell Line	embryonic stem cell
26	chr10:43931400-43933200	Active TSS	Fetal Intestine Large	intestine
27	chr10:43931400-43933200	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr10:43931400-43933200	Active TSS	Skeletal Muscle Male	skeletal muscle
29	chr10:43931400-43933400	Active TSS	Breast Myoepithelial Primary Cells	Breast
30	chr10:43931600-43932800	Active TSS	iPS-18 Cell Line	embryonic stem cell
31	chr10:43931600-43932800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr10:43931600-43932800	Active TSS	Primary T cells from cord blood	blood
33	chr10:43931600-43932800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
34	chr10:43931600-43932800	Active TSS	Primary T helper naive cells from peripheral blood	blood
35	chr10:43931600-43932800	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
36	chr10:43931600-43932800	Active TSS	Aorta	Aorta
37	chr10:43931600-43932800	Active TSS	Brain Angular Gyrus	brain
38	chr10:43931600-43932800	Active TSS	Brain Anterior Caudate	brain
39	chr10:43931600-43932800	Active TSS	Esophagus	oesophagus
40	chr10:43931600-43932800	Active TSS	Fetal Stomach	stomach
41	chr10:43931600-43932800	Active TSS	Left Ventricle	heart
42	chr10:43931600-43932800	Active TSS	Sigmoid Colon	Sigmoid Colon
43	chr10:43931600-43932800	Active TSS	Small Intestine	intestine
44	chr10:43931600-43932800	Active TSS	GM12878-XiMat	blood
45	chr10:43931600-43932800	Active TSS	HSMMtube	muscle
46	chr10:43931600-43933000	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
47	chr10:43931600-43933000	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr10:43931600-43933000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr10:43931600-43933000	Active TSS	iPS-15b Cell Line	embryonic stem cell
50	chr10:43931600-43933000	Active TSS	Brain Cingulate Gyrus	brain

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