Variant report

Variant	rs34707548
Chromosome Location	chr3:132927310-132927311
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10512891	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512896	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12488775	0.81[EUR][1000 genomes]
rs12490128	0.86[EUR][1000 genomes]
rs13072106	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13085858	0.82[EUR][1000 genomes]
rs13087916	0.82[EUR][1000 genomes]
rs13091006	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13097026	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs16840161	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1708373	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17297332	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1849505	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868601	0.83[EUR][1000 genomes]
rs1920021	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2137602	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs33998360	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34066880	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34391675	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34413700	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35128664	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35147454	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35186564	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35356925	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35770748	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35785369	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35971054	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4130892	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4544614	0.83[EUR][1000 genomes]
rs66572811	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67100501	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs67196950	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67607639	0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67625558	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71315696	0.97[ASN][1000 genomes]
rs71315702	0.97[ASN][1000 genomes]
rs73207714	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7612595	0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7625110	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7650741	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530055	chr3:132380878-132982343	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132919400-132928600	Weak transcription	HSMMtube	muscle
2	chr3:132919600-132929600	Weak transcription	Fetal Lung	lung
3	chr3:132923400-132928600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr3:132925400-132927400	Enhancers	iPS-15b Cell Line	embryonic stem cell
5	chr3:132925800-132927600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:132925800-132929200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:132926200-132930400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr3:132926200-132930800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:132926400-132928800	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr3:132926400-132930800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr3:132926600-132928400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr3:132926600-132928800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr3:132926600-132930400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr3:132926800-132928800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr3:132926800-132930200	Weak transcription	Fetal Brain Male	brain
16	chr3:132926800-132931800	Weak transcription	Fetal Brain Female	brain
17	chr3:132927200-132928600	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr3:132927200-132928800	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:132927200-132928800	Weak transcription	HUES64 Cell Line	embryonic stem cell

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