Variant report
| Variant | rs71315702 |
|---|---|
| Chromosome Location | chr3:133028427-133028428 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:36)
| rs_ID | r2[population] |
|---|---|
| rs10512891 | 0.97[ASN][1000 genomes] |
| rs10512896 | 1.00[ASN][1000 genomes] |
| rs13072106 | 0.97[ASN][1000 genomes] |
| rs13091006 | 1.00[ASN][1000 genomes] |
| rs13097026 | 1.00[ASN][1000 genomes] |
| rs16840161 | 1.00[ASN][1000 genomes] |
| rs1708373 | 1.00[ASN][1000 genomes] |
| rs17297332 | 1.00[ASN][1000 genomes] |
| rs1842156 | 0.81[ASN][1000 genomes] |
| rs1849505 | 1.00[ASN][1000 genomes] |
| rs1920021 | 1.00[ASN][1000 genomes] |
| rs2137602 | 1.00[ASN][1000 genomes] |
| rs33998360 | 1.00[ASN][1000 genomes] |
| rs34066880 | 1.00[ASN][1000 genomes] |
| rs34391675 | 1.00[ASN][1000 genomes] |
| rs34413700 | 0.97[ASN][1000 genomes] |
| rs34707548 | 0.97[ASN][1000 genomes] |
| rs35128664 | 1.00[ASN][1000 genomes] |
| rs35147454 | 1.00[ASN][1000 genomes] |
| rs35186564 | 1.00[ASN][1000 genomes] |
| rs35356925 | 1.00[ASN][1000 genomes] |
| rs35770748 | 0.97[ASN][1000 genomes] |
| rs35785369 | 1.00[ASN][1000 genomes] |
| rs35971054 | 0.97[ASN][1000 genomes] |
| rs4130892 | 0.97[ASN][1000 genomes] |
| rs66572811 | 0.97[ASN][1000 genomes] |
| rs67100501 | 0.97[ASN][1000 genomes] |
| rs67196950 | 1.00[ASN][1000 genomes] |
| rs67607639 | 1.00[ASN][1000 genomes] |
| rs67625558 | 0.97[ASN][1000 genomes] |
| rs71315696 | 1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73207714 | 1.00[ASN][1000 genomes] |
| rs73863529 | 0.81[ASN][1000 genomes] |
| rs7612595 | 0.92[ASN][1000 genomes] |
| rs7625110 | 1.00[ASN][1000 genomes] |
| rs7650741 | 0.97[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv4016 | chr3:133015463-133032477 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 2 | esv2757011 | chr3:133020950-133032892 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 3 | esv2759179 | chr3:133020950-133032892 | Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv1014344 | chr3:133024614-133042938 | Enhancers ZNF genes & repeats Strong transcription Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:133016400-133038200 | Weak transcription | Fetal Lung | lung |
| 2 | chr3:133021000-133031800 | Weak transcription | HSMM | muscle |
| 3 | chr3:133021000-133037600 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
