Variant report

Variant	rs73863529
Chromosome Location	chr3:133123287-133123288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133116761..133118281-chr3:133121220..133123369,2	MCF-7	breast:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10512896	0.81[ASN][1000 genomes]
rs13091006	0.81[ASN][1000 genomes]
rs13097026	0.81[ASN][1000 genomes]
rs1513372	0.86[ASN][1000 genomes]
rs16840161	0.81[ASN][1000 genomes]
rs16840382	0.86[ASN][1000 genomes]
rs1708373	0.81[ASN][1000 genomes]
rs17297332	0.81[ASN][1000 genomes]
rs1842156	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1849505	0.81[ASN][1000 genomes]
rs1920021	0.81[ASN][1000 genomes]
rs2137602	0.81[ASN][1000 genomes]
rs33998360	0.81[ASN][1000 genomes]
rs34066880	0.81[ASN][1000 genomes]
rs34391675	0.81[ASN][1000 genomes]
rs35128664	0.81[ASN][1000 genomes]
rs35147454	0.81[ASN][1000 genomes]
rs35186564	0.81[ASN][1000 genomes]
rs35356925	0.81[ASN][1000 genomes]
rs35785369	0.81[ASN][1000 genomes]
rs67196950	0.81[ASN][1000 genomes]
rs67607639	0.81[ASN][1000 genomes]
rs71315696	0.81[ASN][1000 genomes]
rs71315702	0.81[ASN][1000 genomes]
rs73207714	0.81[ASN][1000 genomes]
rs7625110	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877504	chr3:133122216-133172374	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133103400-133123600	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr3:133103800-133123800	Weak transcription	Brain Anterior Caudate	brain
3	chr3:133104400-133131400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:133107200-133123800	Weak transcription	Fetal Thymus	thymus
5	chr3:133110800-133123600	Weak transcription	HSMM	muscle
6	chr3:133113600-133123600	Weak transcription	HSMMtube	muscle
7	chr3:133114200-133127400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr3:133120800-133123600	Weak transcription	Fetal Brain Female	brain
9	chr3:133121000-133123600	Weak transcription	Brain Germinal Matrix	brain
10	chr3:133121600-133124800	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr3:133122000-133124000	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr3:133122000-133124200	Enhancers	Brain Hippocampus Middle	brain
13	chr3:133122000-133124600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr3:133122200-133123800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:133122200-133124000	Enhancers	Brain Substantia Nigra	brain
16	chr3:133122200-133124000	Enhancers	Fetal Muscle Leg	muscle
17	chr3:133122200-133124200	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:133122200-133124200	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr3:133122400-133124000	Enhancers	Fetal Muscle Trunk	muscle
20	chr3:133122600-133123600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr3:133122600-133124400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr3:133122800-133128000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr3:133122800-133129400	Weak transcription	Fetal Lung	lung
24	chr3:133123000-133123800	Weak transcription	Brain Angular Gyrus	brain
25	chr3:133123000-133131800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr3:133123200-133124000	Enhancers	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links