Variant report

Variant	rs16840161
Chromosome Location	chr3:132995726-132995727
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10512891	1.00[CEU][hapmap];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10512896	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1197316	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12490128	0.89[CEU][hapmap]
rs13072106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.87[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.82[TSI][hapmap];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13091006	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13097026	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1513372	1.00[CHB][hapmap]
rs16840382	1.00[CHB][hapmap]
rs1708373	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17297332	0.89[CEU][hapmap];1.00[CHB][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1842156	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[ASN][1000 genomes]
rs1849505	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868601	0.89[CEU][hapmap];0.83[CHD][hapmap]
rs1920021	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2137602	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs33998360	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34066880	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34391675	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34413700	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34707548	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35128664	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35147454	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35186564	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35356925	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35770748	0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35785369	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35971054	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4130892	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs66572811	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67100501	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67196950	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67607639	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67625558	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71315696	1.00[ASN][1000 genomes]
rs71315702	1.00[ASN][1000 genomes]
rs73207714	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73863529	0.81[ASN][1000 genomes]
rs7612595	1.00[CEU][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7625110	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7650741	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.83[LWK][hapmap];0.92[MEX][hapmap];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs16840161	EPHB1	cis	cerebellum	SCAN
rs16840161	TOPBP1	cis	parietal	SCAN

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:132985400-133002800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr3:132988400-132998400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr3:132988800-133002800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:132990200-133002800	Weak transcription	Lung	lung
5	chr3:132990600-133002800	Weak transcription	Right Atrium	heart
6	chr3:132991600-132996600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr3:132994200-132999800	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr3:132994400-132996600	Enhancers	Fetal Brain Female	brain
9	chr3:132994800-132996000	Enhancers	Brain Hippocampus Middle	brain
10	chr3:132994800-132996600	Enhancers	Fetal Brain Male	brain
11	chr3:132994800-132997200	Enhancers	HSMMtube	muscle
12	chr3:132995000-132995800	Enhancers	Brain Angular Gyrus	brain
13	chr3:132995000-132995800	Enhancers	Brain Germinal Matrix	brain
14	chr3:132995200-132995800	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr3:132995200-132997000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr3:132995400-132995800	Enhancers	Fetal Thymus	thymus
17	chr3:132995400-132996000	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr3:132995400-132996000	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr3:132995600-132995800	Bivalent Enhancer	Brain Anterior Caudate	brain
20	chr3:132995600-132995800	Enhancers	Fetal Lung	lung
21	chr3:132995600-132995800	Enhancers	Psoas Muscle	Psoas
22	chr3:132995600-132996800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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