Variant report

Variant	rs34774807
Chromosome Location	chr1:223073066-223073067
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 81 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:76)

rs_ID	r²[population]
rs10495202	0.86[AMR][1000 genomes]
rs1132369	0.86[AMR][1000 genomes]
rs1132371	0.86[AMR][1000 genomes]
rs11588378	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12734196	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17475753	0.86[AMR][1000 genomes]
rs17475774	0.86[AMR][1000 genomes]
rs17477752	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17534704	0.86[AMR][1000 genomes]
rs17534774	0.86[AMR][1000 genomes]
rs17535004	0.86[AMR][1000 genomes]
rs17535032	0.86[AMR][1000 genomes]
rs17535137	0.86[AMR][1000 genomes]
rs17536056	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs17536209	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17536299	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17536396	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17536522	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34080450	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs34151467	0.86[AMR][1000 genomes]
rs34194482	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs34225287	0.86[AMR][1000 genomes]
rs34232799	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34277924	0.82[AMR][1000 genomes]
rs34299243	0.86[AMR][1000 genomes]
rs34355153	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34503525	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34596963	1.00[ASN][1000 genomes]
rs34643369	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs34690779	0.86[AMR][1000 genomes]
rs34701716	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs34713681	0.86[AMR][1000 genomes]
rs34755094	0.86[AMR][1000 genomes]
rs34761499	0.86[AMR][1000 genomes]
rs34791822	0.86[AMR][1000 genomes]
rs34804073	0.86[AMR][1000 genomes]
rs34893395	0.86[AMR][1000 genomes]
rs34962524	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs35131473	0.86[AMR][1000 genomes]
rs35217299	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35270996	0.86[AMR][1000 genomes]
rs35283922	0.86[AMR][1000 genomes]
rs35319605	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35356885	0.82[AMR][1000 genomes]
rs35399857	0.86[AMR][1000 genomes]
rs35506390	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35538644	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35551242	0.96[EUR][1000 genomes]
rs35578837	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35597626	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35597790	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35689138	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35756512	0.82[AMR][1000 genomes]
rs35773347	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35898924	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35912520	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35947021	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs36032255	0.82[AMR][1000 genomes]
rs36066427	0.82[AMR][1000 genomes]
rs36090356	0.86[AMR][1000 genomes]
rs36113407	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4298738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61838119	0.86[AMR][1000 genomes]
rs61839587	0.86[AMR][1000 genomes]
rs61839588	0.86[AMR][1000 genomes]
rs61839600	0.86[AMR][1000 genomes]
rs61839601	0.86[AMR][1000 genomes]
rs61839602	0.86[AMR][1000 genomes]
rs61840263	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs61840271	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61840273	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71644708	0.86[AMR][1000 genomes]
rs71644709	0.90[EUR][1000 genomes]
rs71644714	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71644716	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs71644718	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv999185	chr1:222500725-223278032	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
2	nsv535304	chr1:222500725-223278032	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
3	nsv1012537	chr1:222755091-223512243	Weak transcription Strong transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
4	nsv873206	chr1:222985197-223124916	Active TSS Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1014896	chr1:223070446-223327185	Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:223055800-223082800	Weak transcription	Fetal Heart	heart
2	chr1:223065200-223083000	Weak transcription	Aorta	Aorta
3	chr1:223067200-223077800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:223067800-223089400	Weak transcription	Fetal Intestine Small	intestine
5	chr1:223068200-223083000	Weak transcription	Fetal Stomach	stomach
6	chr1:223071600-223073800	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr1:223071600-223082800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr1:223071600-223082800	Weak transcription	Colon Smooth Muscle	Colon
9	chr1:223071600-223083000	Weak transcription	HSMM	muscle
10	chr1:223071600-223089600	Weak transcription	Fetal Muscle Leg	muscle
11	chr1:223071600-223092400	Weak transcription	Ovary	ovary
12	chr1:223071800-223082800	Weak transcription	Right Atrium	heart
13	chr1:223071800-223089800	Weak transcription	Fetal Lung	lung
14	chr1:223072600-223073200	Enhancers	HepG2	liver
15	chr1:223072800-223073200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:223073000-223073200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr1:223073000-223073200	Enhancers	Left Ventricle	heart
18	chr1:223073000-223073200	Enhancers	Lung	lung
19	chr1:223073000-223073200	Enhancers	Psoas Muscle	Psoas
20	chr1:223073000-223073200	Enhancers	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links