The 2.0 version of rSNPBase

Variant report

Variant rs36090356
Chromosome Location chr1:223000398-223000399
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:39 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:222989400-223002800 Weak transcription Fetal Intestine Small intestine
2 chr1:222989400-223026800 Weak transcription Fetal Muscle Leg muscle
3 chr1:222990400-223027400 Weak transcription Primary B cells from cord blood blood
4 chr1:222991200-223010200 Weak transcription Primary B cells from peripheral blood blood
5 chr1:222991800-223001800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:222991800-223003200 Weak transcription Stomach Smooth Muscle stomach
7 chr1:222991800-223017200 Weak transcription Aorta Aorta
8 chr1:222994000-223003200 Weak transcription Osteobl bone
9 chr1:222994600-223003400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
10 chr1:222994800-223003200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
11 chr1:222995000-223002600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
12 chr1:222995200-223003400 Weak transcription NHDF-Ad bronchial
13 chr1:222995800-223003200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:222997000-223016600 Weak transcription Primary hematopoietic stem cells blood
15 chr1:222998200-223001400 Weak transcription ES-I3 Cell Line embryonic stem cell
16 chr1:222998200-223001800 Weak transcription Colon Smooth Muscle Colon
17 chr1:222998200-223003200 Weak transcription A549 lung
18 chr1:222998200-223003600 Weak transcription Ovary ovary
19 chr1:222998400-223001200 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
20 chr1:222998400-223001200 Weak transcription iPS-18 Cell Line embryonic stem cell
21 chr1:222998400-223001200 Weak transcription iPS-20b Cell Line embryonic stem cell
22 chr1:222998400-223001200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
23 chr1:222998400-223001400 Weak transcription Pancreatic Islets Pancreatic Islet
24 chr1:222998400-223001600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr1:222998400-223001800 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr1:222998400-223002400 Weak transcription Rectal Smooth Muscle rectum
27 chr1:222998400-223006600 Weak transcription Fetal Lung lung
28 chr1:222998600-223003400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
29 chr1:222998800-223001400 Weak transcription HUES48 Cell Line embryonic stem cell
30 chr1:222998800-223001600 Weak transcription HUES64 Cell Line embryonic stem cell
31 chr1:222999400-223003200 Weak transcription Stomach Mucosa stomach
32 chr1:222999600-223001200 Weak transcription iPS-15b Cell Line embryonic stem cell
33 chr1:222999600-223001800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
34 chr1:222999600-223002600 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
35 chr1:222999600-223002600 Weak transcription HepG2 liver
36 chr1:222999600-223002800 Weak transcription Muscle Satellite Cultured Cells --
37 chr1:222999600-223015600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
38 chr1:222999800-223001600 Enhancers Fetal Brain Male brain
39 chr1:223000200-223001400 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015