Variant report

Variant	rs34791545
Chromosome Location	chr17:46488447-46488448
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 55 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs12150117	0.82[EUR][1000 genomes]
rs12939680	0.84[EUR][1000 genomes]
rs12940162	0.83[EUR][1000 genomes]
rs12941877	0.83[EUR][1000 genomes]
rs12945780	0.88[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12948086	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12952824	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1396870	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1533057	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623154	0.83[EUR][1000 genomes]
rs17623482	0.83[EUR][1000 genomes]
rs17696503	0.83[EUR][1000 genomes]
rs17696640	0.83[EUR][1000 genomes]
rs34466582	0.81[EUR][1000 genomes]
rs34771639	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35003027	0.83[EUR][1000 genomes]
rs35387091	0.91[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35509644	0.83[EUR][1000 genomes]
rs35533148	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35680046	0.84[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35713035	0.81[ASN][1000 genomes]
rs35759756	0.83[EUR][1000 genomes]
rs35767434	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs36057069	0.84[ASN][1000 genomes]
rs4128439	0.80[EUR][1000 genomes]
rs4261589	0.96[ASN][1000 genomes]
rs4793846	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5000249	0.96[ASN][1000 genomes]
rs55682156	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56146024	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs56385452	0.84[ASN][1000 genomes]
rs56655886	0.89[AFR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6504257	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66529852	0.85[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7206951	0.82[EUR][1000 genomes]
rs7207826	0.96[ASN][1000 genomes]
rs7209043	0.96[ASN][1000 genomes]
rs7211712	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7214269	0.89[AFR][1000 genomes];0.86[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7215143	0.80[EUR][1000 genomes]
rs7218217	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7218345	0.96[ASN][1000 genomes]
rs7218848	0.83[EUR][1000 genomes]
rs7220387	0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224686	0.83[EUR][1000 genomes]
rs8067857	0.84[ASN][1000 genomes]
rs8072521	0.83[EUR][1000 genomes]
rs8072770	0.89[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8073466	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8074054	0.84[ASN][1000 genomes]
rs8078999	0.81[EUR][1000 genomes]
rs9891635	0.96[ASN][1000 genomes]
rs9897588	0.94[ASN][1000 genomes]
rs9898988	0.93[ASN][1000 genomes]
rs9900511	0.96[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs34791545	SKAP1	Cis_1M	lymphoblastoid	RTeQTL
rs34791545	HOXB2	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46485000-46491200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr17:46485200-46488800	Weak transcription	Primary B cells from peripheral blood	blood
3	chr17:46485400-46488600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:46485400-46488800	Weak transcription	GM12878-XiMat	blood
5	chr17:46485800-46489800	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
6	chr17:46486000-46489800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr17:46486200-46488600	Genic enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr17:46486200-46489200	Strong transcription	Fetal Thymus	thymus
9	chr17:46486600-46488600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr17:46486800-46488800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr17:46486800-46489000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
12	chr17:46486800-46489800	Genic enhancers	Primary T cells fromperipheralblood	blood
13	chr17:46486800-46503000	Weak transcription	Thymus	Thymus
14	chr17:46487400-46488600	Genic enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr17:46487600-46501800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:46487800-46503600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr17:46488000-46488600	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr17:46488000-46488800	Weak transcription	Primary T cells from cord blood	blood
19	chr17:46488000-46488800	Weak transcription	Primary T helper cells PMA-I stimulated	--
20	chr17:46488000-46488800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
21	chr17:46488400-46488800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
22	chr17:46488400-46491600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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