The 2.0 version of rSNPBase

Variant report

Variant rs12939680
Chromosome Location chr17:46458651-46458652
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:23 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr17:46438400-46471800 Weak transcription Thymus Thymus
2 chr17:46450800-46462000 Weak transcription Primary hematopoietic stem cells blood
3 chr17:46452200-46463800 Weak transcription Primary B cells from cord blood blood
4 chr17:46452400-46459600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
5 chr17:46452400-46460200 Weak transcription GM12878-XiMat blood
6 chr17:46452400-46463200 Strong transcription Primary T cells from cord blood blood
7 chr17:46454400-46459800 Weak transcription Fetal Thymus thymus
8 chr17:46454400-46460600 Weak transcription K562 blood
9 chr17:46454600-46459800 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr17:46454600-46461800 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
11 chr17:46456400-46459800 Weak transcription Primary B cells from peripheral blood blood
12 chr17:46456400-46460000 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
13 chr17:46456400-46461600 Weak transcription Primary T helper 17 cells PMA-I stimulated --
14 chr17:46456600-46462800 Weak transcription Primary T killer naive cells fromperipheralblood blood
15 chr17:46456800-46459800 Weak transcription Primary T helper naive cells from peripheral blood blood
16 chr17:46457400-46460600 Strong transcription Primary T helper cells fromperipheralblood blood
17 chr17:46457400-46461800 Strong transcription Primary Natural Killer cells fromperipheralblood blood
18 chr17:46457600-46463200 Strong transcription Primary T cells fromperipheralblood blood
19 chr17:46457600-46464800 Strong transcription Primary T regulatory cells fromperipheralblood blood
20 chr17:46458000-46460400 Strong transcription Primary T helper memory cells from peripheral blood 1 blood
21 chr17:46458400-46459400 Enhancers Primary T helper cells PMA-I stimulated --
22 chr17:46458600-46458800 Genic enhancers Primary T helper naive cells fromperipheralblood blood
23 chr17:46458600-46459000 Genic enhancers Primary T helper memory cells from peripheral blood 2 blood

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Last update: Aug 31, 2015