Variant report

Variant	rs6504145
Chromosome Location	chr17:46340591-46340592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46292663..46294856-chr17:46339280..46340993,2	MCF-7	breast:
2	chr17:46340424..46341008-chr17:46662375..46662930,2	K562	blood:
3	chr17:46340071..46340947-chr17:46670933..46671743,3	K562	blood:
4	chr17:46334050..46336909-chr17:46339101..46341476,2	K562	blood:

Variant related genes	Relation type
ENSG00000120075	Chromatin interaction

Extended variants
information (count: 152 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:152)

rs_ID	r²[population]
rs11079818	0.85[ASN][1000 genomes]
rs11655672	0.85[ASN][1000 genomes]
rs12150117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12449653	1.00[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs12450014	0.88[ASN][1000 genomes]
rs12450081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12450786	0.83[ASN][1000 genomes]
rs12450935	0.85[ASN][1000 genomes]
rs12451412	0.85[ASN][1000 genomes]
rs12452212	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs12452234	0.88[ASN][1000 genomes]
rs12453208	0.88[ASN][1000 genomes]
rs12937965	0.90[ASN][1000 genomes]
rs12938032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12938640	0.82[ASN][1000 genomes]
rs12939680	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12940162	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12940365	1.00[CHB][hapmap];0.90[JPT][hapmap];0.83[ASN][1000 genomes]
rs12940931	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12941754	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12941877	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12941926	0.81[ASN][1000 genomes]
rs12943082	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12944592	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12945780	0.89[EUR][1000 genomes]
rs12946636	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs12948017	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs12948086	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12948128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12950325	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12952824	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12953245	0.83[ASN][1000 genomes]
rs1396870	0.81[CHB][hapmap];0.89[JPT][hapmap];0.90[YRI][hapmap];0.89[EUR][1000 genomes]
rs1533057	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.89[EUR][1000 genomes]
rs1553749	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1553751	0.85[ASN][1000 genomes]
rs1553752	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs1553753	1.00[CHB][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes]
rs16955397	0.88[ASN][1000 genomes]
rs17621199	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17621297	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17621707	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17623154	0.81[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17623482	0.90[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17694192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17694895	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17696503	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17696640	0.90[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1912153	0.85[ASN][1000 genomes]
rs1912154	0.92[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2056458	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs2084881	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs2175158	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs34466582	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs34771639	0.88[EUR][1000 genomes]
rs35003027	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35387091	0.88[EUR][1000 genomes]
rs35509644	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35533148	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35680046	0.88[EUR][1000 genomes]
rs35759756	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35767434	0.88[EUR][1000 genomes]
rs36057069	0.83[EUR][1000 genomes]
rs4128439	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4131712	0.88[ASN][1000 genomes]
rs4312351	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4451990	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs4556829	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs4793846	0.81[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.88[EUR][1000 genomes]
rs5000249	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs55682156	0.89[EUR][1000 genomes]
rs56146024	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56655886	0.87[EUR][1000 genomes]
rs62064554	0.83[ASN][1000 genomes]
rs62067799	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6504135	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6504158	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6504172	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs6504203	0.85[ASN][1000 genomes]
rs6504257	0.88[EUR][1000 genomes]
rs66529852	0.89[EUR][1000 genomes]
rs7206951	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7207826	0.83[CHB][hapmap];0.81[JPT][hapmap]
rs7207928	0.83[ASN][1000 genomes]
rs7209043	0.80[JPT][hapmap]
rs7209522	0.85[ASN][1000 genomes]
rs7209556	0.85[CHB][hapmap];0.83[JPT][hapmap]
rs7209855	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7210445	0.88[ASN][1000 genomes]
rs7210708	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7211607	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7211712	0.89[EUR][1000 genomes]
rs7212149	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7212930	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7213513	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7214269	0.89[EUR][1000 genomes]
rs7214589	0.88[ASN][1000 genomes]
rs7215143	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7216971	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7217025	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7217120	1.00[CHB][hapmap];0.91[JPT][hapmap];0.83[ASN][1000 genomes]
rs7218217	0.89[EUR][1000 genomes]
rs7218848	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7219816	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7219985	0.92[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs7220387	0.89[EUR][1000 genomes]
rs7221770	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs7222452	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs7222593	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7224686	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7225998	0.81[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs8065115	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8065385	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs8067857	0.82[EUR][1000 genomes]
rs8067953	0.85[ASN][1000 genomes]
rs8068128	1.00[CHB][hapmap];0.90[JPT][hapmap];0.88[ASN][1000 genomes]
rs8068397	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs8068623	0.83[ASN][1000 genomes]
rs8069900	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8072521	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8072770	0.85[CEU][hapmap];0.83[CHB][hapmap];0.90[JPT][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes]
rs8073466	0.89[EUR][1000 genomes]
rs8073710	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs8073888	0.85[ASN][1000 genomes]
rs8074054	0.83[EUR][1000 genomes]
rs8074212	0.80[ASN][1000 genomes]
rs8074443	1.00[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs8076655	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8078038	0.85[ASN][1000 genomes]
rs8078999	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8081754	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8082009	0.90[ASN][1000 genomes]
rs9303542	0.90[CHB][hapmap];0.88[ASN][1000 genomes]
rs9747133	0.88[ASN][1000 genomes]
rs9890142	0.83[ASN][1000 genomes]
rs9890488	0.88[ASN][1000 genomes]
rs9891073	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9894812	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]
rs9895123	0.91[ASN][1000 genomes]
rs9895985	1.00[CHB][hapmap];0.91[ASN][1000 genomes]
rs9897162	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9899213	0.90[ASN][1000 genomes]
rs9901279	0.90[ASN][1000 genomes]
rs9905220	0.91[ASN][1000 genomes]
rs9905961	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs9906193	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs9906651	0.85[ASN][1000 genomes]
rs9907699	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9909002	1.00[CHB][hapmap];0.91[JPT][hapmap];0.85[ASN][1000 genomes]
rs9909872	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs9910535	1.00[CHB][hapmap];0.91[JPT][hapmap];0.90[ASN][1000 genomes]
rs9916227	1.00[CHB][hapmap];0.91[JPT][hapmap];0.88[ASN][1000 genomes]

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:46336200-46342400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:46337000-46343000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr17:46337200-46341800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:46337200-46341800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr17:46337600-46341400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
15	chr17:46338000-46342400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr17:46338200-46341400	Strong transcription	Primary T cells fromperipheralblood	blood
17	chr17:46338800-46340800	Weak transcription	Fetal Intestine Small	intestine
18	chr17:46338800-46342200	Weak transcription	Fetal Intestine Large	intestine
19	chr17:46339000-46341000	Enhancers	A549	lung
20	chr17:46339000-46341800	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr17:46339000-46343000	Weak transcription	K562	blood
22	chr17:46339200-46343400	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr17:46339400-46342800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr17:46339400-46343600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:46339600-46341000	Weak transcription	HUVEC	blood vessel
26	chr17:46339600-46343000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr17:46339600-46343800	Enhancers	NHDF-Ad	bronchial
28	chr17:46339800-46341800	Weak transcription	Primary T helper cells PMA-I stimulated	--
29	chr17:46339800-46343200	Weak transcription	Primary T helper cells fromperipheralblood	blood
30	chr17:46339800-46352200	Weak transcription	Primary T cells from cord blood	blood
31	chr17:46340200-46341600	Enhancers	Fetal Kidney	kidney
32	chr17:46340200-46342200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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