Variant report

Variant	rs12938032
Chromosome Location	chr17:46347928-46347929
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46345603..46350515-chr17:46350981..46354335,5	K562	blood:
2	chr17:46346886..46348579-chr17:46498069..46500502,2	K562	blood:
3	chr17:46345117..46348349-chr17:46350525..46352936,3	K562	blood:

Extended variants
information (count: 148 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs11079818	0.90[ASN][1000 genomes]
rs11655672	0.90[ASN][1000 genomes]
rs12150117	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12449653	0.88[ASN][1000 genomes]
rs12450014	0.93[ASN][1000 genomes]
rs12450081	0.93[ASN][1000 genomes]
rs12450786	0.88[ASN][1000 genomes]
rs12450935	0.90[ASN][1000 genomes]
rs12451412	0.90[ASN][1000 genomes]
rs12452212	0.93[ASN][1000 genomes]
rs12452234	0.93[ASN][1000 genomes]
rs12453208	0.92[ASN][1000 genomes]
rs12937965	0.95[ASN][1000 genomes]
rs12938640	0.87[ASN][1000 genomes]
rs12939680	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12940162	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12940365	0.88[ASN][1000 genomes]
rs12940931	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12941754	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12941877	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12941926	0.85[ASN][1000 genomes]
rs12943082	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12944592	0.90[ASN][1000 genomes]
rs12945429	0.81[ASN][1000 genomes]
rs12945780	0.88[EUR][1000 genomes]
rs12946636	0.88[ASN][1000 genomes]
rs12948017	0.90[ASN][1000 genomes]
rs12948086	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12948128	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12950325	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12952824	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12953245	0.88[ASN][1000 genomes]
rs1396870	0.88[EUR][1000 genomes]
rs1533057	0.88[EUR][1000 genomes]
rs1553749	0.90[ASN][1000 genomes]
rs1553751	0.90[ASN][1000 genomes]
rs1553752	0.90[ASN][1000 genomes]
rs1553753	0.90[ASN][1000 genomes]
rs16955397	0.93[ASN][1000 genomes]
rs17621199	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17621297	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17621707	0.80[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17623154	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17623482	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17694192	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17694895	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17696503	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17696640	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1912153	0.90[ASN][1000 genomes]
rs1912154	0.90[ASN][1000 genomes]
rs2056458	0.90[ASN][1000 genomes]
rs2084881	0.95[ASN][1000 genomes]
rs2175158	0.88[ASN][1000 genomes]
rs34466582	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34771639	0.86[EUR][1000 genomes]
rs35003027	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35387091	0.86[EUR][1000 genomes]
rs35509644	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35533148	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35680046	0.86[EUR][1000 genomes]
rs35759756	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35767434	0.86[EUR][1000 genomes]
rs36057069	0.81[EUR][1000 genomes]
rs4128439	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4131712	0.93[ASN][1000 genomes]
rs4312351	0.95[ASN][1000 genomes]
rs4451990	0.93[ASN][1000 genomes]
rs4556829	0.95[ASN][1000 genomes]
rs4793846	0.86[EUR][1000 genomes]
rs55682156	0.87[EUR][1000 genomes]
rs56146024	0.85[AFR][1000 genomes];0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56655886	0.86[EUR][1000 genomes]
rs62064554	0.88[ASN][1000 genomes]
rs62067799	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504135	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6504145	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6504158	0.93[ASN][1000 genomes]
rs6504172	0.93[ASN][1000 genomes]
rs6504203	0.90[ASN][1000 genomes]
rs6504257	0.86[EUR][1000 genomes]
rs66529852	0.88[EUR][1000 genomes]
rs7206951	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7207928	0.88[ASN][1000 genomes]
rs7209522	0.90[ASN][1000 genomes]
rs7209855	0.93[ASN][1000 genomes]
rs7210445	0.93[ASN][1000 genomes]
rs7210708	0.90[ASN][1000 genomes]
rs7211607	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7211712	0.87[EUR][1000 genomes]
rs7212149	0.88[ASN][1000 genomes]
rs7212930	0.95[ASN][1000 genomes]
rs7213513	0.93[ASN][1000 genomes]
rs7214269	0.87[EUR][1000 genomes]
rs7214589	0.93[ASN][1000 genomes]
rs7215143	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7216971	0.90[ASN][1000 genomes]
rs7217025	0.90[ASN][1000 genomes]
rs7217120	0.88[ASN][1000 genomes]
rs7218217	0.88[EUR][1000 genomes]
rs7218848	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7219816	0.93[ASN][1000 genomes]
rs7219985	0.95[ASN][1000 genomes]
rs7220387	0.88[EUR][1000 genomes]
rs7221770	0.93[ASN][1000 genomes]
rs7222452	0.90[ASN][1000 genomes]
rs7222593	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7224686	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7225998	0.95[ASN][1000 genomes]
rs8065115	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs8065385	0.95[ASN][1000 genomes]
rs8067857	0.81[EUR][1000 genomes]
rs8067953	0.90[ASN][1000 genomes]
rs8068128	0.93[ASN][1000 genomes]
rs8068397	0.95[ASN][1000 genomes]
rs8068623	0.88[ASN][1000 genomes]
rs8069900	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8072521	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8072770	0.86[EUR][1000 genomes]
rs8073466	0.87[EUR][1000 genomes]
rs8073888	0.90[ASN][1000 genomes]
rs8074054	0.81[EUR][1000 genomes]
rs8074212	0.85[ASN][1000 genomes]
rs8074443	0.90[ASN][1000 genomes]
rs8076655	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8078038	0.90[ASN][1000 genomes]
rs8078999	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8081754	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8082009	0.95[ASN][1000 genomes]
rs9303542	0.93[ASN][1000 genomes]
rs9747133	0.93[ASN][1000 genomes]
rs9890142	0.88[ASN][1000 genomes]
rs9890488	0.93[ASN][1000 genomes]
rs9891073	0.90[ASN][1000 genomes]
rs9894812	0.93[ASN][1000 genomes]
rs9895123	0.96[ASN][1000 genomes]
rs9895985	0.96[ASN][1000 genomes]
rs9897162	0.90[ASN][1000 genomes]
rs9899213	0.95[ASN][1000 genomes]
rs9901279	0.95[ASN][1000 genomes]
rs9905220	0.96[ASN][1000 genomes]
rs9905961	0.95[ASN][1000 genomes]
rs9906193	0.95[ASN][1000 genomes]
rs9906651	0.90[ASN][1000 genomes]
rs9907699	0.90[ASN][1000 genomes]
rs9909002	0.90[ASN][1000 genomes]
rs9909872	0.95[ASN][1000 genomes]
rs9910535	0.95[ASN][1000 genomes]
rs9916227	0.93[ASN][1000 genomes]

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
6	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr17:46339800-46352200	Weak transcription	Primary T cells from cord blood	blood
8	chr17:46343400-46354000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46343400-46355800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr17:46343600-46356000	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr17:46343800-46348000	Weak transcription	Fetal Heart	heart
13	chr17:46343800-46352400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46343800-46353800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:46344200-46352400	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr17:46344400-46352600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr17:46344600-46356000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr17:46346800-46348000	Weak transcription	A549	lung
19	chr17:46347000-46348800	Weak transcription	K562	blood
20	chr17:46347800-46349000	Enhancers	Psoas Muscle	Psoas
21	chr17:46347800-46349000	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr17:46347800-46349000	Enhancers	Skeletal Muscle Female	skeletal muscle

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