Variant report

Variant	rs4128439
Chromosome Location	chr17:46375211-46375212
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46372838..46377462-chr17:46383835..46389128,6	K562	blood:
2	chr17:46373773..46376497-chr17:46380672..46383534,2	MCF-7	breast:
3	chr17:46374830..46377462-chr17:46386139..46388346,2	K562	blood:

Variant related genes	Relation type
ENSG00000235300	Chromatin interaction

Extended variants
information (count: 150 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:150)

rs_ID	r²[population]
rs11079818	0.91[ASN][1000 genomes]
rs11655672	0.91[ASN][1000 genomes]
rs12150117	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12449653	0.89[ASN][1000 genomes]
rs12450014	0.94[ASN][1000 genomes]
rs12450081	0.94[ASN][1000 genomes]
rs12450786	0.89[ASN][1000 genomes]
rs12450935	0.91[ASN][1000 genomes]
rs12451412	0.91[ASN][1000 genomes]
rs12452212	0.94[ASN][1000 genomes]
rs12452234	0.94[ASN][1000 genomes]
rs12453208	0.94[ASN][1000 genomes]
rs12937965	0.96[ASN][1000 genomes]
rs12938032	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12938640	0.88[ASN][1000 genomes]
rs12939680	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12940162	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12940365	0.89[ASN][1000 genomes]
rs12940931	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12941754	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12941877	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12941926	0.86[ASN][1000 genomes]
rs12943082	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12944592	0.91[ASN][1000 genomes]
rs12945429	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12945780	0.92[EUR][1000 genomes]
rs12946636	0.89[ASN][1000 genomes]
rs12948017	0.91[ASN][1000 genomes]
rs12948086	0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12948128	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12950325	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12952824	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12953245	0.89[ASN][1000 genomes]
rs1396870	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs1533057	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs1553749	0.91[ASN][1000 genomes]
rs1553751	0.91[ASN][1000 genomes]
rs1553752	0.91[ASN][1000 genomes]
rs1553753	0.91[ASN][1000 genomes]
rs16955397	0.94[ASN][1000 genomes]
rs17621199	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17621297	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17621707	0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623154	0.81[CEU][hapmap];0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17623482	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694192	1.00[CEU][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694895	0.94[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17696503	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17696640	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1912153	0.91[ASN][1000 genomes]
rs1912154	0.91[ASN][1000 genomes]
rs2056458	0.91[ASN][1000 genomes]
rs2084881	0.96[ASN][1000 genomes]
rs2175158	0.89[ASN][1000 genomes]
rs34466582	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34771639	0.88[EUR][1000 genomes]
rs34791545	0.80[EUR][1000 genomes]
rs35003027	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35387091	0.88[EUR][1000 genomes]
rs35509644	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35533148	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35680046	0.88[EUR][1000 genomes]
rs35713035	0.80[EUR][1000 genomes]
rs35759756	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35767434	0.88[EUR][1000 genomes]
rs36057069	0.83[EUR][1000 genomes]
rs4131712	0.94[ASN][1000 genomes]
rs4312351	0.96[ASN][1000 genomes]
rs4451990	0.94[ASN][1000 genomes]
rs4556829	0.96[ASN][1000 genomes]
rs4793846	0.81[CEU][hapmap];0.88[EUR][1000 genomes]
rs55682156	0.92[EUR][1000 genomes]
rs56146024	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56655886	0.87[EUR][1000 genomes]
rs62064554	0.89[ASN][1000 genomes]
rs62067799	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6504135	1.00[CEU][hapmap];0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6504145	1.00[CEU][hapmap];0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6504158	0.94[ASN][1000 genomes]
rs6504172	0.94[ASN][1000 genomes]
rs6504203	0.91[ASN][1000 genomes]
rs6504257	0.88[EUR][1000 genomes]
rs66529852	0.89[EUR][1000 genomes]
rs7206951	0.85[CEU][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7207928	0.89[ASN][1000 genomes]
rs7209522	0.91[ASN][1000 genomes]
rs7209855	0.94[ASN][1000 genomes]
rs7210445	0.94[ASN][1000 genomes]
rs7210708	0.91[ASN][1000 genomes]
rs7211607	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7211712	0.92[EUR][1000 genomes]
rs7212149	0.89[ASN][1000 genomes]
rs7212930	0.96[ASN][1000 genomes]
rs7213513	0.94[ASN][1000 genomes]
rs7214269	0.92[EUR][1000 genomes]
rs7214589	0.94[ASN][1000 genomes]
rs7215143	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216971	0.91[ASN][1000 genomes]
rs7217025	0.91[ASN][1000 genomes]
rs7217120	0.89[ASN][1000 genomes]
rs7218217	0.92[EUR][1000 genomes]
rs7218848	0.85[CEU][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7219816	0.94[ASN][1000 genomes]
rs7219985	0.96[ASN][1000 genomes]
rs7220387	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7221770	0.94[ASN][1000 genomes]
rs7222452	0.91[ASN][1000 genomes]
rs7222593	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7224686	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7225998	0.81[CEU][hapmap];0.96[ASN][1000 genomes]
rs8065115	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8065385	0.96[ASN][1000 genomes]
rs8067857	0.82[EUR][1000 genomes]
rs8067953	0.91[ASN][1000 genomes]
rs8068128	0.94[ASN][1000 genomes]
rs8068397	0.96[ASN][1000 genomes]
rs8068623	0.89[ASN][1000 genomes]
rs8069900	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072521	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8072770	0.85[CEU][hapmap];0.88[EUR][1000 genomes]
rs8073466	0.92[EUR][1000 genomes]
rs8073888	0.91[ASN][1000 genomes]
rs8074054	0.94[CEU][hapmap];0.83[EUR][1000 genomes]
rs8074212	0.86[ASN][1000 genomes]
rs8074443	0.91[ASN][1000 genomes]
rs8076655	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8078038	0.91[ASN][1000 genomes]
rs8078999	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8081754	1.00[CEU][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8082009	0.96[ASN][1000 genomes]
rs9303542	0.94[ASN][1000 genomes]
rs9747133	0.94[ASN][1000 genomes]
rs9890142	0.89[ASN][1000 genomes]
rs9890488	0.94[ASN][1000 genomes]
rs9891073	0.91[ASN][1000 genomes]
rs9894812	0.94[ASN][1000 genomes]
rs9895123	0.95[ASN][1000 genomes]
rs9895985	0.95[ASN][1000 genomes]
rs9897162	0.91[ASN][1000 genomes]
rs9899213	0.96[ASN][1000 genomes]
rs9901279	0.96[ASN][1000 genomes]
rs9905220	0.95[ASN][1000 genomes]
rs9905961	0.96[ASN][1000 genomes]
rs9906193	0.96[ASN][1000 genomes]
rs9906651	0.91[ASN][1000 genomes]
rs9907699	0.91[ASN][1000 genomes]
rs9909002	0.91[ASN][1000 genomes]
rs9909872	0.96[ASN][1000 genomes]
rs9910535	0.96[ASN][1000 genomes]
rs9916227	0.94[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46372800-46377400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr17:46372800-46378400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:46373200-46375800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46373200-46376400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr17:46373200-46376800	Enhancers	GM12878-XiMat	blood
6	chr17:46373200-46378200	Enhancers	Primary T helper cells fromperipheralblood	blood
7	chr17:46373200-46378600	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr17:46373200-46415000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
9	chr17:46373600-46375400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr17:46373600-46375800	Enhancers	Fetal Intestine Small	intestine
11	chr17:46373600-46377200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr17:46373600-46388400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46374200-46376400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
14	chr17:46374600-46376200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
15	chr17:46374800-46375400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr17:46375000-46375400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr17:46375000-46375400	Enhancers	Fetal Intestine Large	intestine
18	chr17:46375000-46375400	Enhancers	Stomach Mucosa	stomach
19	chr17:46375000-46375600	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr17:46375000-46376200	Enhancers	Primary T helper naive cells from peripheral blood	blood
21	chr17:46375000-46376600	Enhancers	Primary T cells from cord blood	blood
22	chr17:46375000-46378400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
23	chr17:46375200-46375600	Enhancers	Sigmoid Colon	Sigmoid Colon
24	chr17:46375200-46375800	Enhancers	Primary T cells fromperipheralblood	blood

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