Variant report

Variant	rs12941754
Chromosome Location	chr17:46337036-46337037
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:46212538..46213096-chr17:46336664..46337231,2	MCF-7	breast:
2	chr17:46292653..46293618-chr17:46336496..46337643,9	MCF-7	breast:
3	chr17:46328583..46331168-chr17:46336391..46339869,3	K562	blood:
4	chr17:46336874..46338866-chr17:46712341..46715282,2	MCF-7	breast:
5	chr17:46230636..46231674-chr17:46336798..46337466,4	MCF-7	breast:
6	chr17:46258967..46259629-chr17:46336437..46337387,2	MCF-7	breast:
7	chr17:46335792..46337533-chr17:46664070..46666326,2	K562	blood:

Extended variants
information (count: 144 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:144)

rs_ID	r²[population]
rs11079818	0.83[ASN][1000 genomes]
rs11655672	0.83[ASN][1000 genomes]
rs12150117	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12449653	0.81[ASN][1000 genomes]
rs12450014	0.85[ASN][1000 genomes]
rs12450081	0.85[ASN][1000 genomes]
rs12450786	0.81[ASN][1000 genomes]
rs12450935	0.83[ASN][1000 genomes]
rs12451412	0.83[ASN][1000 genomes]
rs12452212	0.85[ASN][1000 genomes]
rs12452234	0.85[ASN][1000 genomes]
rs12453208	0.85[ASN][1000 genomes]
rs12937965	0.88[ASN][1000 genomes]
rs12938032	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12939680	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12940162	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12940365	0.81[ASN][1000 genomes]
rs12940931	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12941877	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12943082	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12944592	0.83[ASN][1000 genomes]
rs12945780	0.87[EUR][1000 genomes]
rs12946636	0.81[ASN][1000 genomes]
rs12948017	0.83[ASN][1000 genomes]
rs12948086	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12948128	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12950325	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12952824	0.80[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12953245	0.81[ASN][1000 genomes]
rs1396870	0.87[EUR][1000 genomes]
rs1533057	0.87[EUR][1000 genomes]
rs1553749	0.83[ASN][1000 genomes]
rs1553751	0.83[ASN][1000 genomes]
rs1553752	0.83[ASN][1000 genomes]
rs1553753	0.83[ASN][1000 genomes]
rs16955397	0.85[ASN][1000 genomes]
rs17621199	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17621297	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17621707	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17623154	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17623482	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17694192	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17694895	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17696503	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17696640	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1912153	0.83[ASN][1000 genomes]
rs1912154	0.83[ASN][1000 genomes]
rs2056458	0.83[ASN][1000 genomes]
rs2084881	0.88[ASN][1000 genomes]
rs2175158	0.81[ASN][1000 genomes]
rs34466582	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34771639	0.85[EUR][1000 genomes]
rs35003027	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35387091	0.85[EUR][1000 genomes]
rs35509644	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35533148	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35680046	0.85[EUR][1000 genomes]
rs35759756	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35767434	0.85[EUR][1000 genomes]
rs36057069	0.80[EUR][1000 genomes]
rs4128439	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4131712	0.85[ASN][1000 genomes]
rs4312351	0.88[ASN][1000 genomes]
rs4451990	0.85[ASN][1000 genomes]
rs4556829	0.88[ASN][1000 genomes]
rs4793846	0.85[EUR][1000 genomes]
rs55682156	0.86[EUR][1000 genomes]
rs56146024	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56655886	0.84[EUR][1000 genomes]
rs62064554	0.81[ASN][1000 genomes]
rs62067799	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6504135	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6504145	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6504158	0.85[ASN][1000 genomes]
rs6504172	0.85[ASN][1000 genomes]
rs6504203	0.83[ASN][1000 genomes]
rs6504257	0.85[EUR][1000 genomes]
rs66529852	0.87[EUR][1000 genomes]
rs7206951	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7207928	0.83[ASN][1000 genomes]
rs7209522	0.83[ASN][1000 genomes]
rs7209855	0.85[ASN][1000 genomes]
rs7210445	0.85[ASN][1000 genomes]
rs7210708	0.83[ASN][1000 genomes]
rs7211607	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7211712	0.86[EUR][1000 genomes]
rs7212149	0.81[ASN][1000 genomes]
rs7212930	0.88[ASN][1000 genomes]
rs7213513	0.85[ASN][1000 genomes]
rs7214269	0.86[EUR][1000 genomes]
rs7214589	0.85[ASN][1000 genomes]
rs7215143	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7216971	0.83[ASN][1000 genomes]
rs7217025	0.83[ASN][1000 genomes]
rs7217120	0.81[ASN][1000 genomes]
rs7218217	0.87[EUR][1000 genomes]
rs7218848	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7219816	0.85[ASN][1000 genomes]
rs7219985	0.88[ASN][1000 genomes]
rs7220387	0.87[EUR][1000 genomes]
rs7221770	0.85[ASN][1000 genomes]
rs7222452	0.83[ASN][1000 genomes]
rs7222593	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7224686	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7225998	0.88[ASN][1000 genomes]
rs8065115	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8065385	0.88[ASN][1000 genomes]
rs8067953	0.83[ASN][1000 genomes]
rs8068128	0.85[ASN][1000 genomes]
rs8068397	0.88[ASN][1000 genomes]
rs8068623	0.81[ASN][1000 genomes]
rs8069900	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8072521	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8072770	0.85[EUR][1000 genomes]
rs8073466	0.86[EUR][1000 genomes]
rs8073888	0.83[ASN][1000 genomes]
rs8074054	0.80[EUR][1000 genomes]
rs8074212	0.80[ASN][1000 genomes]
rs8074443	0.83[ASN][1000 genomes]
rs8076655	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8078038	0.83[ASN][1000 genomes]
rs8078999	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8081754	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8082009	0.88[ASN][1000 genomes]
rs9303542	0.85[ASN][1000 genomes]
rs9747133	0.85[ASN][1000 genomes]
rs9890142	0.81[ASN][1000 genomes]
rs9890488	0.85[ASN][1000 genomes]
rs9891073	0.83[ASN][1000 genomes]
rs9894812	0.85[ASN][1000 genomes]
rs9895123	0.89[ASN][1000 genomes]
rs9895985	0.89[ASN][1000 genomes]
rs9897162	0.83[ASN][1000 genomes]
rs9899213	0.88[ASN][1000 genomes]
rs9901279	0.88[ASN][1000 genomes]
rs9905220	0.89[ASN][1000 genomes]
rs9905961	0.88[ASN][1000 genomes]
rs9906193	0.88[ASN][1000 genomes]
rs9906651	0.83[ASN][1000 genomes]
rs9907699	0.83[ASN][1000 genomes]
rs9909002	0.83[ASN][1000 genomes]
rs9909872	0.88[ASN][1000 genomes]
rs9910535	0.88[ASN][1000 genomes]
rs9916227	0.85[ASN][1000 genomes]

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46322600-46341800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
3	chr17:46322600-46342200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
4	chr17:46322800-46356200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
6	chr17:46324200-46355800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr17:46324800-46343000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:46326200-46361200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr17:46333200-46338600	Enhancers	A549	lung
11	chr17:46335200-46337200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr17:46335400-46337600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr17:46335600-46337200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr17:46335600-46338200	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr17:46335600-46338600	Weak transcription	Primary T cells from cord blood	blood
16	chr17:46336000-46338800	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr17:46336200-46337600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
18	chr17:46336200-46340200	Weak transcription	Fetal Kidney	kidney
19	chr17:46336200-46342400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr17:46336400-46338600	Weak transcription	K562	blood
21	chr17:46336800-46339200	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr17:46336800-46339400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr17:46337000-46337200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
24	chr17:46337000-46338600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr17:46337000-46339200	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr17:46337000-46339200	Enhancers	HUES64 Cell Line	embryonic stem cell
27	chr17:46337000-46339400	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr17:46337000-46339600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr17:46337000-46339600	Enhancers	HUVEC	blood vessel
30	chr17:46337000-46343000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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