Variant report

Variant	rs8076655
Chromosome Location	chr17:46363787-46363788
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 154 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs11079818	0.91[ASN][1000 genomes]
rs11655672	0.91[ASN][1000 genomes]
rs12150117	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12449653	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[JPT][hapmap];0.89[ASN][1000 genomes]
rs12450014	0.94[ASN][1000 genomes]
rs12450081	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs12450786	0.89[ASN][1000 genomes]
rs12450935	0.91[ASN][1000 genomes]
rs12451412	0.91[ASN][1000 genomes]
rs12452212	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs12452234	0.94[ASN][1000 genomes]
rs12453208	0.94[ASN][1000 genomes]
rs12937965	0.96[ASN][1000 genomes]
rs12938032	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12938640	0.88[ASN][1000 genomes]
rs12939680	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12940162	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12940365	1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[JPT][hapmap];0.89[ASN][1000 genomes]
rs12940931	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12941754	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12941877	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12941926	0.86[ASN][1000 genomes]
rs12943082	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12944592	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs12945429	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs12945780	0.91[EUR][1000 genomes]
rs12946636	1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs12948017	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs12948086	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12948128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12950325	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12952824	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12953245	0.89[ASN][1000 genomes]
rs1396870	0.81[CEU][hapmap];0.82[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1533057	0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.88[EUR][1000 genomes]
rs1553749	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1553751	0.91[ASN][1000 genomes]
rs1553752	0.91[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs1553753	1.00[CHB][hapmap];0.90[JPT][hapmap];0.91[ASN][1000 genomes]
rs16955397	0.94[ASN][1000 genomes]
rs17621199	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17621297	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17621707	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17623154	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17623482	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17624868	0.85[CEU][hapmap]
rs17694192	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17694895	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17696503	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17696640	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17697950	0.84[CHB][hapmap]
rs1912153	0.91[ASN][1000 genomes]
rs1912154	0.92[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2056458	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs2084881	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs2175158	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs34466582	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34771639	0.87[EUR][1000 genomes]
rs35003027	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35387091	0.87[EUR][1000 genomes]
rs35509644	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35533148	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35680046	0.87[EUR][1000 genomes]
rs35759756	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35767434	0.87[EUR][1000 genomes]
rs36057069	0.81[EUR][1000 genomes]
rs4128439	1.00[CEU][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4131712	0.94[ASN][1000 genomes]
rs4312351	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs4451990	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs4556829	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs4793846	0.85[CEU][hapmap];0.84[CHB][hapmap];0.90[JPT][hapmap];0.87[EUR][1000 genomes]
rs5000249	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs55682156	0.90[EUR][1000 genomes]
rs56146024	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56655886	0.86[EUR][1000 genomes]
rs62064554	0.89[ASN][1000 genomes]
rs62067799	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6504135	1.00[ASW][hapmap];1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[LWK][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6504145	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6504158	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6504172	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs6504203	0.91[ASN][1000 genomes]
rs6504257	0.87[EUR][1000 genomes]
rs66529852	0.88[EUR][1000 genomes]
rs7206951	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7207826	0.84[CHB][hapmap];0.81[JPT][hapmap]
rs7207928	0.89[ASN][1000 genomes]
rs7209522	0.91[ASN][1000 genomes]
rs7209556	0.86[CHB][hapmap];0.83[JPT][hapmap]
rs7209855	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7210445	0.94[ASN][1000 genomes]
rs7210708	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7211607	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7211712	0.90[EUR][1000 genomes]
rs7212149	1.00[CHB][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7212930	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs7213513	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7214269	0.90[EUR][1000 genomes]
rs7214589	0.94[ASN][1000 genomes]
rs7215143	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7216971	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7217025	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7217120	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.89[ASN][1000 genomes]
rs7218217	0.91[EUR][1000 genomes]
rs7218848	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7219816	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7219985	0.92[CHB][hapmap];0.89[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs7220387	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7221770	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs7222452	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs7222593	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.88[MKK][hapmap];1.00[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7224686	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7225998	0.80[CEU][hapmap];1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs8065115	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8065385	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs8067857	0.81[EUR][1000 genomes]
rs8067953	0.91[ASN][1000 genomes]
rs8068128	1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[ASN][1000 genomes]
rs8068397	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs8068623	0.89[ASN][1000 genomes]
rs8069900	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8072521	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8072770	0.89[ASW][hapmap];0.85[CEU][hapmap];0.84[CHB][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.82[LWK][hapmap];0.92[MEX][hapmap];0.96[TSI][hapmap];0.85[YRI][hapmap];0.87[EUR][1000 genomes]
rs8073466	0.90[EUR][1000 genomes]
rs8073710	0.92[CHB][hapmap];0.83[JPT][hapmap]
rs8073888	0.91[ASN][1000 genomes]
rs8074054	1.00[CEU][hapmap];0.84[CHB][hapmap];0.89[JPT][hapmap];0.81[EUR][1000 genomes]
rs8074212	0.86[ASN][1000 genomes]
rs8074443	1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes]
rs8078038	0.91[ASN][1000 genomes]
rs8078999	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8081754	1.00[CEU][hapmap];0.92[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs8082009	0.96[ASN][1000 genomes]
rs9303542	0.90[CHB][hapmap];0.94[ASN][1000 genomes]
rs9747133	0.94[ASN][1000 genomes]
rs9890142	0.89[ASN][1000 genomes]
rs9890488	0.94[ASN][1000 genomes]
rs9891073	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9894812	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]
rs9895123	0.95[ASN][1000 genomes]
rs9895985	0.92[CHB][hapmap];1.00[CHD][hapmap];0.95[ASN][1000 genomes]
rs9897162	1.00[CHB][hapmap];0.96[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9899213	0.96[ASN][1000 genomes]
rs9901279	0.96[ASN][1000 genomes]
rs9905220	0.95[ASN][1000 genomes]
rs9905961	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs9906193	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs9906651	0.91[ASN][1000 genomes]
rs9907699	1.00[CHB][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9909002	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.91[ASN][1000 genomes]
rs9909872	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs9910535	1.00[CHB][hapmap];0.91[JPT][hapmap];0.96[ASN][1000 genomes]
rs9916227	1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[JPT][hapmap];0.94[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs8076655	PNPO	cis	parietal	SCAN
rs8076655	HOXB6	cis	cerebellum	SCAN
rs8076655	PNPO	cis	cerebellum	SCAN

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46319600-46372000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr17:46323000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
3	chr17:46324200-46371600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr17:46343400-46371200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
5	chr17:46356600-46370000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
6	chr17:46356600-46370800	Weak transcription	GM12878-XiMat	blood
7	chr17:46357000-46370800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
8	chr17:46357000-46371200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr17:46357400-46371200	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr17:46357600-46371400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr17:46358200-46371000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr17:46361400-46364400	Weak transcription	K562	blood
13	chr17:46361400-46371000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr17:46361600-46367800	Weak transcription	Stomach Mucosa	stomach
15	chr17:46361600-46371000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
16	chr17:46361600-46371800	Weak transcription	Primary T cells from cord blood	blood
17	chr17:46362200-46371000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr17:46363200-46364000	Enhancers	A549	lung
19	chr17:46363200-46370800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links