Variant report

Variant	rs34830562
Chromosome Location	chr7:117367214-117367215
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117359274..117361366-chr7:117364889..117367642,2	K562	blood:
2	chr7:117358870..117360774-chr7:117364748..117367642,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10257581	0.87[EUR][1000 genomes]
rs12530721	0.90[EUR][1000 genomes]
rs34151592	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34201995	0.83[EUR][1000 genomes]
rs34309075	0.83[EUR][1000 genomes]
rs34464201	0.83[EUR][1000 genomes]
rs34480179	0.83[EUR][1000 genomes]
rs34511745	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34567454	0.83[EUR][1000 genomes]
rs34587451	0.83[EUR][1000 genomes]
rs34605897	0.85[EUR][1000 genomes]
rs34643488	0.85[EUR][1000 genomes]
rs34674313	0.83[EUR][1000 genomes]
rs34787450	0.85[EUR][1000 genomes]
rs34830471	0.83[EUR][1000 genomes]
rs34995970	0.83[EUR][1000 genomes]
rs35294574	0.83[EUR][1000 genomes]
rs35305858	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35320768	0.83[EUR][1000 genomes]
rs35504264	0.83[EUR][1000 genomes]
rs35506750	0.83[EUR][1000 genomes]
rs35537814	0.83[EUR][1000 genomes]
rs35553213	0.83[EUR][1000 genomes]
rs35683365	0.85[EUR][1000 genomes]
rs35836271	0.83[EUR][1000 genomes]
rs35900505	0.83[EUR][1000 genomes]
rs35916162	0.83[EUR][1000 genomes]
rs36073009	0.85[EUR][1000 genomes]
rs36117041	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv464695	chr7:117342771-117393516	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv608258	chr7:117342771-117393516	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117327000-117376400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr7:117346600-117373400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:117349600-117385000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr7:117350200-117373800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr7:117352800-117368000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr7:117353200-117384600	Weak transcription	Ovary	ovary
7	chr7:117353400-117367800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr7:117354600-117373800	Weak transcription	Esophagus	oesophagus
9	chr7:117354800-117417200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:117355000-117382800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr7:117355800-117369400	Weak transcription	Rectal Mucosa Donor 29	rectum
12	chr7:117356200-117431400	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:117356800-117376000	Weak transcription	NH-A	brain
14	chr7:117357200-117374800	Weak transcription	Pancreas	Pancrea
15	chr7:117357600-117375400	Weak transcription	Duodenum Mucosa	Duodenum
16	chr7:117357800-117370800	Weak transcription	Fetal Intestine Large	intestine
17	chr7:117358200-117370000	Weak transcription	Fetal Kidney	kidney
18	chr7:117358400-117371400	Weak transcription	Fetal Intestine Small	intestine
19	chr7:117358400-117398800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr7:117358600-117368000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr7:117359200-117402600	Weak transcription	Spleen	Spleen
22	chr7:117359800-117368000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr7:117360000-117368000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr7:117360200-117374000	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr7:117360400-117368200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr7:117360400-117369000	Weak transcription	Adipose Nuclei	Adipose
27	chr7:117360600-117374800	Weak transcription	Left Ventricle	heart
28	chr7:117362600-117394000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr7:117362800-117368200	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr7:117362800-117371000	Strong transcription	Fetal Lung	lung
31	chr7:117363200-117401000	Weak transcription	Rectal Smooth Muscle	rectum
32	chr7:117363800-117368400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
33	chr7:117364000-117368000	Strong transcription	Brain Inferior Temporal Lobe	brain
34	chr7:117364000-117368200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
35	chr7:117364000-117375400	Strong transcription	Fetal Brain Female	brain
36	chr7:117364200-117376600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
37	chr7:117364400-117368200	Strong transcription	Stomach Smooth Muscle	stomach
38	chr7:117364600-117368400	Strong transcription	Fetal Stomach	stomach
39	chr7:117364800-117368000	Weak transcription	Brain Angular Gyrus	brain
40	chr7:117365000-117371600	Weak transcription	Right Atrium	heart
41	chr7:117365400-117367800	Weak transcription	Brain Substantia Nigra	brain
42	chr7:117365400-117371400	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr7:117365400-117371600	Weak transcription	HUES64 Cell Line	embryonic stem cell
44	chr7:117365400-117373400	Weak transcription	NHLF	lung
45	chr7:117365400-117380800	Weak transcription	Fetal Brain Male	brain
46	chr7:117365600-117407000	Weak transcription	Colon Smooth Muscle	Colon
47	chr7:117366000-117368000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
48	chr7:117366000-117369200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr7:117366600-117368400	Strong transcription	Aorta	Aorta
50	chr7:117366800-117368000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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