Variant report

Variant	rs35836271
Chromosome Location	chr7:117257601-117257602
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117256748..117259660-chr7:117262256..117265219,3	K562	blood:
2	chr7:117257272..117259077-chr7:117312247..117314442,2	MCF-7	breast:
3	chr7:117255614..117259660-chr7:117261825..117265320,4	K562	blood:
4	chr7:117225312..117228075-chr7:117256874..117259172,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000234001	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10244810	0.89[EUR][1000 genomes]
rs10246649	0.96[EUR][1000 genomes]
rs1800130	0.87[EUR][1000 genomes]
rs28449716	0.96[EUR][1000 genomes]
rs28472519	0.96[EUR][1000 genomes]
rs34034651	0.96[EUR][1000 genomes]
rs34151592	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34201995	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34309075	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34464201	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34480179	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34489981	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34511745	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34567454	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34587451	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34652497	0.86[EUR][1000 genomes]
rs34674313	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34830471	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34830562	0.83[EUR][1000 genomes]
rs34849722	0.86[EUR][1000 genomes]
rs34995970	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35294574	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35305858	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35320768	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35475211	0.96[EUR][1000 genomes]
rs35504264	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35506750	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35537814	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35553213	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35783977	0.83[EUR][1000 genomes]
rs35900505	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35916162	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36042090	0.96[EUR][1000 genomes]
rs36046385	0.86[EUR][1000 genomes]
rs36117041	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4148717	0.96[EUR][1000 genomes]
rs6965682	0.96[EUR][1000 genomes]
rs6968747	0.96[EUR][1000 genomes]
rs7809485	0.96[EUR][1000 genomes]

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117253000-117267200	Weak transcription	Dnd41	blood
3	chr7:117256400-117258000	Enhancers	Fetal Intestine Small	intestine
4	chr7:117256400-117258200	Enhancers	Fetal Intestine Large	intestine
5	chr7:117256600-117258000	Enhancers	Rectal Mucosa Donor 29	rectum
6	chr7:117256600-117258200	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr7:117257000-117263600	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:117257600-117270000	Weak transcription	Stomach Mucosa	stomach

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