Variant report

Variant	rs28449716
Chromosome Location	chr7:117252058-117252059
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:117251668-117255413..7:117341506-117356953	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 100 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:97)

rs_ID	r²[population]
rs10155917	1.00[ASN][1000 genomes]
rs10156138	1.00[ASN][1000 genomes]
rs10224175	1.00[ASN][1000 genomes]
rs10230259	1.00[ASN][1000 genomes]
rs10234329	1.00[ASN][1000 genomes]
rs10240521	1.00[ASN][1000 genomes]
rs10240654	1.00[ASN][1000 genomes]
rs10242827	1.00[ASN][1000 genomes]
rs10244810	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10246649	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10249971	1.00[ASN][1000 genomes]
rs1025342	1.00[ASN][1000 genomes]
rs10255092	1.00[ASN][1000 genomes]
rs10258791	1.00[ASN][1000 genomes]
rs10262610	1.00[ASN][1000 genomes]
rs10262673	1.00[ASN][1000 genomes]
rs10264450	1.00[ASN][1000 genomes]
rs10264892	1.00[ASN][1000 genomes]
rs10266649	1.00[ASN][1000 genomes]
rs10270610	1.00[ASN][1000 genomes]
rs10276355	1.00[ASN][1000 genomes]
rs10278953	1.00[ASN][1000 genomes]
rs10487364	1.00[ASN][1000 genomes]
rs12536356	1.00[ASN][1000 genomes]
rs17139821	1.00[ASN][1000 genomes]
rs17450482	1.00[ASN][1000 genomes]
rs17544734	1.00[ASN][1000 genomes]
rs17545644	1.00[ASN][1000 genomes]
rs17547485	1.00[ASN][1000 genomes]
rs177071	1.00[ASN][1000 genomes]
rs1800130	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800503	1.00[ASN][1000 genomes]
rs213972	1.00[ASN][1000 genomes]
rs2518872	1.00[ASN][1000 genomes]
rs28472519	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28517401	1.00[ASN][1000 genomes]
rs34034651	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34201995	0.96[EUR][1000 genomes]
rs34268361	1.00[ASN][1000 genomes]
rs34309075	0.96[EUR][1000 genomes]
rs34420782	1.00[ASN][1000 genomes]
rs34464201	0.96[EUR][1000 genomes]
rs34480179	0.96[EUR][1000 genomes]
rs34489981	0.89[EUR][1000 genomes]
rs34567454	0.96[EUR][1000 genomes]
rs34587451	0.96[EUR][1000 genomes]
rs34606983	1.00[ASN][1000 genomes]
rs34652497	0.83[EUR][1000 genomes]
rs34654194	1.00[ASN][1000 genomes]
rs34674313	0.96[EUR][1000 genomes]
rs34830471	0.96[EUR][1000 genomes]
rs34849722	0.83[EUR][1000 genomes]
rs34995970	0.96[EUR][1000 genomes]
rs35003065	1.00[ASN][1000 genomes]
rs35130797	1.00[ASN][1000 genomes]
rs35294574	0.96[EUR][1000 genomes]
rs35305858	0.96[EUR][1000 genomes]
rs35320768	0.96[EUR][1000 genomes]
rs35342599	1.00[ASN][1000 genomes]
rs35415299	1.00[ASN][1000 genomes]
rs35475211	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35504264	0.96[EUR][1000 genomes]
rs35506750	0.96[EUR][1000 genomes]
rs35537814	0.96[EUR][1000 genomes]
rs35553213	0.96[EUR][1000 genomes]
rs35615558	1.00[ASN][1000 genomes]
rs35715578	1.00[ASN][1000 genomes]
rs35775845	1.00[ASN][1000 genomes]
rs35777371	1.00[ASN][1000 genomes]
rs35820454	1.00[ASN][1000 genomes]
rs35836271	0.96[EUR][1000 genomes]
rs35900505	0.96[EUR][1000 genomes]
rs35916162	0.96[EUR][1000 genomes]
rs35987553	1.00[ASN][1000 genomes]
rs35995554	1.00[ASN][1000 genomes]
rs36042090	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36046385	0.83[EUR][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs4148717	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4285411	1.00[ASN][1000 genomes]
rs6466610	1.00[ASN][1000 genomes]
rs6943074	1.00[ASN][1000 genomes]
rs6943509	1.00[ASN][1000 genomes]
rs6963669	1.00[ASN][1000 genomes]
rs6965682	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968747	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480763	1.00[ASN][1000 genomes]
rs7779015	1.00[ASN][1000 genomes]
rs7795896	1.00[ASN][1000 genomes]
rs7799504	1.00[ASN][1000 genomes]
rs7802924	1.00[ASN][1000 genomes]
rs7808474	1.00[ASN][1000 genomes]
rs7809485	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7812185	1.00[ASN][1000 genomes]
rs916727	1.00[ASN][1000 genomes]
rs916728	1.00[ASN][1000 genomes]
rs9886209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv889086	chr7:117214089-117252873	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3437516	chr7:117252049-117252113	Weak transcription Genic enhancers Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117244200-117252600	Weak transcription	Dnd41	blood
2	chr7:117244200-117253200	Weak transcription	Rectal Smooth Muscle	rectum
3	chr7:117245000-117252800	Weak transcription	Small Intestine	intestine
4	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
5	chr7:117245800-117256600	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:117246400-117255600	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr7:117251000-117253200	Genic enhancers	Fetal Intestine Large	intestine
8	chr7:117251200-117252600	Weak transcription	Duodenum Mucosa	Duodenum
9	chr7:117251400-117252600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:117252000-117252600	Strong transcription	Rectal Mucosa Donor 31	rectum

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