Variant report

Variant	rs7795896
Chromosome Location	chr7:117086613-117086614
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:117074183..117076697-chr7:117085572..117088159,2	MCF-7	breast:
2	chr7:117080401..117082220-chr7:117085348..117087219,2	K562	blood:
3	chr7:117080401..117082569-chr7:117084180..117087219,3	K562	blood:
4	chr7:117074197..117078420-chr7:117083146..117089116,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214684	Chromatin interaction

Extended variants
information (count: 87 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:86)

rs_ID	r²[population]
rs10155917	1.00[ASN][1000 genomes]
rs10156138	1.00[ASN][1000 genomes]
rs10224175	1.00[ASN][1000 genomes]
rs10230259	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10234329	1.00[ASN][1000 genomes]
rs10237017	1.00[ASN][1000 genomes]
rs10240521	1.00[ASN][1000 genomes]
rs10240654	1.00[ASN][1000 genomes]
rs10242827	1.00[ASW][hapmap];0.91[GIH][hapmap];0.94[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];0.85[TSI][hapmap];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244810	1.00[ASN][1000 genomes]
rs10249971	1.00[ASN][1000 genomes]
rs1025342	1.00[ASN][1000 genomes]
rs10255092	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258791	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262610	1.00[ASN][1000 genomes]
rs10262673	1.00[ASN][1000 genomes]
rs10264450	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264892	1.00[ASN][1000 genomes]
rs10266649	1.00[ASN][1000 genomes]
rs10270610	1.00[ASN][1000 genomes]
rs10276355	1.00[ASN][1000 genomes]
rs10278953	0.87[ASW][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.92[LWK][hapmap];0.91[MEX][hapmap];0.93[MKK][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487364	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs12536356	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139821	1.00[ASN][1000 genomes]
rs17450482	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17544734	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17545644	1.00[CHD][hapmap];1.00[ASN][1000 genomes]
rs17547485	1.00[ASN][1000 genomes]
rs177069	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs177071	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800130	1.00[ASN][1000 genomes]
rs1800503	1.00[ASN][1000 genomes]
rs213972	1.00[ASN][1000 genomes]
rs2518872	1.00[ASN][1000 genomes]
rs254537	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs254538	0.81[ASW][hapmap];1.00[CHD][hapmap];0.94[LWK][hapmap];0.83[MEX][hapmap];0.94[MKK][hapmap];0.92[YRI][hapmap];0.87[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs28449716	1.00[ASN][1000 genomes]
rs28472519	1.00[ASN][1000 genomes]
rs28517401	1.00[ASN][1000 genomes]
rs34268361	1.00[ASN][1000 genomes]
rs34420782	1.00[ASN][1000 genomes]
rs34606983	1.00[ASN][1000 genomes]
rs34654194	1.00[ASN][1000 genomes]
rs35003065	1.00[ASN][1000 genomes]
rs35130797	1.00[ASN][1000 genomes]
rs35342599	1.00[ASN][1000 genomes]
rs35415299	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35615558	1.00[ASN][1000 genomes]
rs35715578	1.00[ASN][1000 genomes]
rs35775845	1.00[ASN][1000 genomes]
rs35777371	1.00[ASN][1000 genomes]
rs35820454	1.00[ASN][1000 genomes]
rs35987553	1.00[ASN][1000 genomes]
rs35995554	1.00[ASN][1000 genomes]
rs36042090	1.00[ASN][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs39308	1.00[ASN][1000 genomes]
rs39309	1.00[ASN][1000 genomes]
rs39310	1.00[CHD][hapmap];0.91[MEX][hapmap];1.00[ASN][1000 genomes]
rs39311	1.00[ASN][1000 genomes]
rs39314	1.00[ASN][1000 genomes]
rs39320	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39321	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39322	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39325	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148717	1.00[ASN][1000 genomes]
rs4285411	1.00[ASW][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];0.91[MEX][hapmap];0.98[MKK][hapmap];0.83[TSI][hapmap];0.88[YRI][hapmap];0.82[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466610	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943074	1.00[ASN][1000 genomes]
rs6943509	1.00[ASN][1000 genomes]
rs6961545	1.00[ASN][1000 genomes]
rs6963669	1.00[ASW][hapmap];0.91[GIH][hapmap];0.94[LWK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965682	1.00[ASN][1000 genomes]
rs6968747	1.00[ASN][1000 genomes]
rs73480763	1.00[ASN][1000 genomes]
rs7779015	1.00[ASN][1000 genomes]
rs7779160	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7799504	1.00[ASN][1000 genomes]
rs7802924	1.00[ASN][1000 genomes]
rs7808474	1.00[ASN][1000 genomes]
rs7809485	1.00[ASN][1000 genomes]
rs7812185	1.00[ASN][1000 genomes]
rs916727	1.00[CHD][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916728	1.00[ASW][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[LWK][hapmap];0.90[MEX][hapmap];0.82[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886209	1.00[ASW][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.86[TSI][hapmap];0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7795896	CFTR	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117082200-117088400	Weak transcription	Pancreas	Pancrea
2	chr7:117085600-117089200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr7:117085800-117088600	Weak transcription	HMEC	breast

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