Variant report

Variant	rs35987553
Chromosome Location	chr7:117195557-117195558
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr7:117195388-117195586	K562	blood:	n/a	n/a
2	USF1	chr7:117195394-117195612	SK-N-SH_RA	brain:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:117194433-117196955	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
CFTR	TF binding region
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 90 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10155917	1.00[ASN][1000 genomes]
rs10156138	1.00[ASN][1000 genomes]
rs10224175	1.00[ASN][1000 genomes]
rs10230259	1.00[ASN][1000 genomes]
rs10234329	1.00[ASN][1000 genomes]
rs10237017	1.00[ASN][1000 genomes]
rs10240521	1.00[ASN][1000 genomes]
rs10240654	1.00[ASN][1000 genomes]
rs10242827	1.00[ASN][1000 genomes]
rs10244810	1.00[ASN][1000 genomes]
rs10249971	1.00[ASN][1000 genomes]
rs1025342	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255092	1.00[ASN][1000 genomes]
rs10258791	1.00[ASN][1000 genomes]
rs10262610	1.00[ASN][1000 genomes]
rs10262673	1.00[ASN][1000 genomes]
rs10264450	1.00[ASN][1000 genomes]
rs10264892	1.00[ASN][1000 genomes]
rs10266649	1.00[ASN][1000 genomes]
rs10270610	1.00[ASN][1000 genomes]
rs10276355	1.00[ASN][1000 genomes]
rs10278953	1.00[ASN][1000 genomes]
rs10487364	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536356	1.00[ASN][1000 genomes]
rs17139821	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450482	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17544734	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545644	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17547485	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs177071	1.00[ASN][1000 genomes]
rs1800130	1.00[ASN][1000 genomes]
rs1800503	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213954	0.94[EUR][1000 genomes]
rs213972	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2518872	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs254537	1.00[ASN][1000 genomes]
rs254538	1.00[ASN][1000 genomes]
rs28449716	1.00[ASN][1000 genomes]
rs28472519	1.00[ASN][1000 genomes]
rs28517401	1.00[ASN][1000 genomes]
rs34268361	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34420782	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606983	1.00[ASN][1000 genomes]
rs34654194	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35003065	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35130797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35342599	1.00[ASN][1000 genomes]
rs35415299	1.00[ASN][1000 genomes]
rs35615558	1.00[ASN][1000 genomes]
rs35715578	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35775845	1.00[ASN][1000 genomes]
rs35777371	1.00[ASN][1000 genomes]
rs35820454	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995554	1.00[ASN][1000 genomes]
rs36042090	1.00[ASN][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs39308	1.00[ASN][1000 genomes]
rs39309	1.00[ASN][1000 genomes]
rs39310	1.00[ASN][1000 genomes]
rs39311	1.00[ASN][1000 genomes]
rs39314	1.00[ASN][1000 genomes]
rs39320	1.00[ASN][1000 genomes]
rs39321	1.00[ASN][1000 genomes]
rs39322	1.00[ASN][1000 genomes]
rs39325	1.00[ASN][1000 genomes]
rs4148717	1.00[ASN][1000 genomes]
rs4285411	1.00[ASN][1000 genomes]
rs6466610	1.00[ASN][1000 genomes]
rs6943074	1.00[ASN][1000 genomes]
rs6943509	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961545	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963669	1.00[ASN][1000 genomes]
rs6965682	1.00[ASN][1000 genomes]
rs6968747	1.00[ASN][1000 genomes]
rs73480763	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779015	1.00[ASN][1000 genomes]
rs7795896	1.00[ASN][1000 genomes]
rs7799504	1.00[ASN][1000 genomes]
rs7802924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808474	1.00[ASN][1000 genomes]
rs7809485	1.00[ASN][1000 genomes]
rs7812185	1.00[ASN][1000 genomes]
rs916727	1.00[ASN][1000 genomes]
rs916728	1.00[ASN][1000 genomes]
rs9886209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889077	chr7:117129404-117238379	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv889079	chr7:117156341-117199533	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1800675	chr7:117159386-117204462	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv889080	chr7:117176248-117238379	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117173000-117208000	Weak transcription	Pancreas	Pancrea
2	chr7:117181400-117213400	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr7:117185800-117203600	Weak transcription	Fetal Intestine Large	intestine
4	chr7:117187000-117205200	Weak transcription	Stomach Mucosa	stomach
5	chr7:117193400-117205200	Weak transcription	Fetal Intestine Small	intestine
6	chr7:117195400-117195800	Strong transcription	Duodenum Mucosa	Duodenum
7	chr7:117195400-117195800	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr7:117195400-117196000	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links