Variant report

Variant	rs35777371
Chromosome Location	chr7:117244645-117244646
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117244166..117245859-chr7:117250473..117252926,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000001626	Chromatin interaction

Extended variants
information (count: 91 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10155917	1.00[ASN][1000 genomes]
rs10156138	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10224175	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10227037	1.00[AMR][1000 genomes]
rs10230259	1.00[ASN][1000 genomes]
rs10234329	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10240521	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10240654	1.00[ASN][1000 genomes]
rs10242827	1.00[ASN][1000 genomes]
rs10244810	1.00[ASN][1000 genomes]
rs10249971	1.00[ASN][1000 genomes]
rs1025342	1.00[ASN][1000 genomes]
rs10255092	1.00[ASN][1000 genomes]
rs10258791	1.00[ASN][1000 genomes]
rs10262610	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10262673	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10264450	1.00[ASN][1000 genomes]
rs10264892	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10266649	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10270610	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10276355	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10278953	1.00[ASN][1000 genomes]
rs10487364	1.00[ASN][1000 genomes]
rs12536356	1.00[ASN][1000 genomes]
rs17139821	1.00[ASN][1000 genomes]
rs17450482	1.00[ASN][1000 genomes]
rs17544734	1.00[ASN][1000 genomes]
rs17545644	1.00[ASN][1000 genomes]
rs17547485	1.00[ASN][1000 genomes]
rs177071	1.00[ASN][1000 genomes]
rs1800130	1.00[ASN][1000 genomes]
rs1800503	1.00[ASN][1000 genomes]
rs213972	1.00[ASN][1000 genomes]
rs2518872	1.00[ASN][1000 genomes]
rs254537	1.00[ASN][1000 genomes]
rs254538	1.00[ASN][1000 genomes]
rs28449716	1.00[ASN][1000 genomes]
rs28472519	1.00[ASN][1000 genomes]
rs28517401	1.00[ASN][1000 genomes]
rs34268361	1.00[ASN][1000 genomes]
rs34420782	1.00[ASN][1000 genomes]
rs34606983	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34654194	1.00[ASN][1000 genomes]
rs34680574	1.00[AMR][1000 genomes]
rs34739284	1.00[AMR][1000 genomes]
rs34783030	1.00[AMR][1000 genomes]
rs35003065	1.00[ASN][1000 genomes]
rs35130797	1.00[ASN][1000 genomes]
rs35191087	1.00[AMR][1000 genomes]
rs35342599	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35358095	1.00[AMR][1000 genomes]
rs35415299	1.00[ASN][1000 genomes]
rs35615558	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35715578	1.00[ASN][1000 genomes]
rs35731674	1.00[AMR][1000 genomes]
rs35775845	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35820454	1.00[ASN][1000 genomes]
rs35987553	1.00[ASN][1000 genomes]
rs35995554	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs36042090	1.00[ASN][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs39321	1.00[ASN][1000 genomes]
rs39322	1.00[ASN][1000 genomes]
rs39325	1.00[ASN][1000 genomes]
rs4148717	1.00[ASN][1000 genomes]
rs4285411	1.00[ASN][1000 genomes]
rs6466610	1.00[ASN][1000 genomes]
rs6943074	1.00[ASN][1000 genomes]
rs6943509	1.00[ASN][1000 genomes]
rs6961545	1.00[ASN][1000 genomes]
rs6963669	1.00[ASN][1000 genomes]
rs6965682	1.00[ASN][1000 genomes]
rs6968747	1.00[ASN][1000 genomes]
rs73480763	1.00[ASN][1000 genomes]
rs7779015	1.00[ASN][1000 genomes]
rs7795896	1.00[ASN][1000 genomes]
rs7799504	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7802924	1.00[ASN][1000 genomes]
rs7808474	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7809485	1.00[ASN][1000 genomes]
rs7812185	1.00[ASN][1000 genomes]
rs916727	1.00[ASN][1000 genomes]
rs916728	1.00[ASN][1000 genomes]
rs9886209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889078	chr7:117135025-117246315	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv889082	chr7:117203417-117246315	Genic enhancers Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv889083	chr7:117203417-117256374	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv889084	chr7:117212723-117246315	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv889085	chr7:117214089-117246315	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv889086	chr7:117214089-117252873	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv889087	chr7:117226766-117246315	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117233000-117245000	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr7:117236200-117244800	Weak transcription	Pancreas	Pancrea
3	chr7:117236200-117245600	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:117236600-117245600	Weak transcription	Colonic Mucosa	Colon
5	chr7:117236800-117244800	Weak transcription	Fetal Intestine Large	intestine
6	chr7:117237600-117245000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:117240600-117244800	Weak transcription	A549	lung
8	chr7:117242400-117244800	Weak transcription	Fetal Intestine Small	intestine
9	chr7:117244000-117245000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr7:117244000-117247200	Weak transcription	Gastric	stomach
11	chr7:117244200-117252600	Weak transcription	Dnd41	blood
12	chr7:117244200-117253200	Weak transcription	Rectal Smooth Muscle	rectum
13	chr7:117244400-117245000	Enhancers	Small Intestine	intestine

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