Variant report

Variant	rs10230259
Chromosome Location	chr7:117033753-117033754
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:117026471..117028516-chr7:117031449..117034908,3	K562	blood:

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:84)

rs_ID	r²[population]
rs10155917	1.00[ASN][1000 genomes]
rs10156138	1.00[ASN][1000 genomes]
rs10224175	1.00[ASN][1000 genomes]
rs10234329	1.00[ASN][1000 genomes]
rs10237017	1.00[ASN][1000 genomes]
rs10240521	1.00[ASN][1000 genomes]
rs10240654	1.00[ASN][1000 genomes]
rs10242827	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10244810	1.00[ASN][1000 genomes]
rs10249971	1.00[ASN][1000 genomes]
rs1025342	1.00[ASN][1000 genomes]
rs10255092	0.96[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258791	1.00[CEU][hapmap];0.91[YRI][hapmap];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262610	1.00[ASN][1000 genomes]
rs10262673	1.00[ASN][1000 genomes]
rs10264450	0.92[CEU][hapmap];0.91[YRI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264892	1.00[ASN][1000 genomes]
rs10266649	1.00[ASN][1000 genomes]
rs10276355	1.00[ASN][1000 genomes]
rs10278953	0.95[CEU][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487364	1.00[ASN][1000 genomes]
rs12536356	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139821	1.00[ASN][1000 genomes]
rs17450482	1.00[ASN][1000 genomes]
rs17544734	1.00[ASN][1000 genomes]
rs17545644	1.00[ASN][1000 genomes]
rs17547485	1.00[ASN][1000 genomes]
rs177071	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1800130	1.00[ASN][1000 genomes]
rs1800503	1.00[ASN][1000 genomes]
rs213972	1.00[ASN][1000 genomes]
rs2518872	1.00[ASN][1000 genomes]
rs254537	0.92[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs254538	0.83[CEU][hapmap];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28449716	1.00[ASN][1000 genomes]
rs28472519	1.00[ASN][1000 genomes]
rs28517401	1.00[ASN][1000 genomes]
rs34268361	1.00[ASN][1000 genomes]
rs34420782	1.00[ASN][1000 genomes]
rs34606983	1.00[ASN][1000 genomes]
rs34654194	1.00[ASN][1000 genomes]
rs35003065	1.00[ASN][1000 genomes]
rs35130797	1.00[ASN][1000 genomes]
rs35342599	1.00[ASN][1000 genomes]
rs35415299	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35615558	1.00[ASN][1000 genomes]
rs35715578	1.00[ASN][1000 genomes]
rs35775845	1.00[ASN][1000 genomes]
rs35777371	1.00[ASN][1000 genomes]
rs35820454	1.00[ASN][1000 genomes]
rs35987553	1.00[ASN][1000 genomes]
rs35995554	1.00[ASN][1000 genomes]
rs36042090	1.00[ASN][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs39308	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39309	0.91[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39310	0.87[CEU][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39311	0.88[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39314	1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39320	0.96[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39321	0.96[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39322	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39325	0.92[CEU][hapmap];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4148717	1.00[ASN][1000 genomes]
rs4285411	0.91[CEU][hapmap];0.81[YRI][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466610	0.92[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943074	1.00[ASN][1000 genomes]
rs6943509	1.00[ASN][1000 genomes]
rs6961545	1.00[ASN][1000 genomes]
rs6963669	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965682	1.00[ASN][1000 genomes]
rs6968747	1.00[ASN][1000 genomes]
rs73480763	1.00[ASN][1000 genomes]
rs7779015	1.00[ASN][1000 genomes]
rs7779160	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7795896	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7799504	1.00[ASN][1000 genomes]
rs7802924	1.00[ASN][1000 genomes]
rs7808474	1.00[ASN][1000 genomes]
rs7809485	1.00[ASN][1000 genomes]
rs7812185	1.00[ASN][1000 genomes]
rs916727	0.91[CEU][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916728	0.91[CEU][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886209	0.95[CEU][hapmap];0.91[YRI][hapmap];0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117033600-117034000	Enhancers	Liver	Liver
2	chr7:117033600-117034200	Enhancers	A549	lung

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