Variant report

Variant	rs34268361
Chromosome Location	chr7:117122865-117122866
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	7:116434729-116454408..7:117120895-117125676	Hela-S3	cervix:
2	7:115847372-115857098..7:117120895-117125676	Hela-S3	cervix:
3	chr7:117121404..117122949-chr7:117125530..117127895,2	K562	blood:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction
ENSG00000198898	Chromatin interaction
ENSG00000237974	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:85)

rs_ID	r²[population]
rs10155917	1.00[ASN][1000 genomes]
rs10156138	1.00[ASN][1000 genomes]
rs10224175	1.00[ASN][1000 genomes]
rs10230259	1.00[ASN][1000 genomes]
rs10234329	1.00[ASN][1000 genomes]
rs10237017	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240521	1.00[ASN][1000 genomes]
rs10240654	1.00[ASN][1000 genomes]
rs10242827	1.00[ASN][1000 genomes]
rs10244810	1.00[ASN][1000 genomes]
rs10249971	1.00[ASN][1000 genomes]
rs1025342	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10255092	1.00[ASN][1000 genomes]
rs10258791	1.00[ASN][1000 genomes]
rs10262610	1.00[ASN][1000 genomes]
rs10262673	1.00[ASN][1000 genomes]
rs10264450	1.00[ASN][1000 genomes]
rs10264892	1.00[ASN][1000 genomes]
rs10266649	1.00[ASN][1000 genomes]
rs10270610	1.00[ASN][1000 genomes]
rs10276355	1.00[ASN][1000 genomes]
rs10278953	1.00[ASN][1000 genomes]
rs10487364	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12536356	1.00[ASN][1000 genomes]
rs17139821	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17450482	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17544734	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17545644	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17547485	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs177071	1.00[ASN][1000 genomes]
rs1800130	1.00[ASN][1000 genomes]
rs1800503	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs213954	0.83[EUR][1000 genomes]
rs213972	1.00[ASN][1000 genomes]
rs2518872	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs254537	1.00[ASN][1000 genomes]
rs254538	1.00[ASN][1000 genomes]
rs28449716	1.00[ASN][1000 genomes]
rs28472519	1.00[ASN][1000 genomes]
rs28517401	1.00[ASN][1000 genomes]
rs34420782	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606983	1.00[ASN][1000 genomes]
rs34654194	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35003065	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35130797	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35342599	1.00[ASN][1000 genomes]
rs35415299	1.00[ASN][1000 genomes]
rs35615558	1.00[ASN][1000 genomes]
rs35715578	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35775845	1.00[ASN][1000 genomes]
rs35777371	1.00[ASN][1000 genomes]
rs35820454	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35987553	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35995554	1.00[ASN][1000 genomes]
rs36042090	1.00[ASN][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs39308	1.00[ASN][1000 genomes]
rs39309	1.00[ASN][1000 genomes]
rs39310	1.00[ASN][1000 genomes]
rs39311	1.00[ASN][1000 genomes]
rs39314	1.00[ASN][1000 genomes]
rs39320	1.00[ASN][1000 genomes]
rs39321	1.00[ASN][1000 genomes]
rs39322	1.00[ASN][1000 genomes]
rs39325	1.00[ASN][1000 genomes]
rs4148717	1.00[ASN][1000 genomes]
rs4285411	1.00[ASN][1000 genomes]
rs6466610	1.00[ASN][1000 genomes]
rs6943074	1.00[ASN][1000 genomes]
rs6943509	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6961545	0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6963669	1.00[ASN][1000 genomes]
rs6965682	1.00[ASN][1000 genomes]
rs6968747	1.00[ASN][1000 genomes]
rs73480763	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7779015	1.00[ASN][1000 genomes]
rs7795896	1.00[ASN][1000 genomes]
rs7799504	1.00[ASN][1000 genomes]
rs7802924	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7808474	1.00[ASN][1000 genomes]
rs7809485	1.00[ASN][1000 genomes]
rs7812185	1.00[ASN][1000 genomes]
rs916727	1.00[ASN][1000 genomes]
rs916728	1.00[ASN][1000 genomes]
rs9886209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889076	chr7:117064625-117147547	Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117118400-117124400	Active TSS	Rectal Mucosa Donor 29	rectum
2	chr7:117118600-117123200	Active TSS	Duodenum Mucosa	Duodenum
3	chr7:117118800-117123200	Active TSS	Fetal Intestine Small	intestine
4	chr7:117119800-117123000	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr7:117120200-117124800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr7:117120400-117123600	Weak transcription	Pancreas	Pancrea
7	chr7:117121200-117126000	Weak transcription	Colonic Mucosa	Colon
8	chr7:117121600-117125000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr7:117122000-117125000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr7:117122200-117125200	Weak transcription	Hela-S3	cervix
11	chr7:117122400-117127800	Enhancers	Fetal Intestine Large	intestine
12	chr7:117122800-117123200	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
13	chr7:117122800-117123800	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet

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