Variant report

Variant	rs39309
Chromosome Location	chr7:116952304-116952305
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:116938981..116940552-chr7:116950596..116953276,2	K562	blood:
2	7:115847372-115857098..7:116949919-116957096	GM12878	blood:
3	7:116434729-116454408..7:116949919-116957096	H1-hESC	embryonic stem cell:	embryo
4	chr7:116950227..116952723-chr7:116968350..116970678,2	K562	blood:
5	7:115861595-115870968..7:116949919-116957096	Hela-S3	cervix:
6	7:116604327-116608063..7:116949919-116957096	H1-hESC	embryonic stem cell:	embryo
7	chr7:116944814..116946552-chr7:116952146..116954082,2	K562	blood:
8	7:115890993-115892266..7:116949919-116957096	H1-hESC	embryonic stem cell:	embryo

No data

Variant related genes	Relation type
ENSG00000198898	Chromatin interaction
ENSG00000228368	Chromatin interaction
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10230259	0.91[CEU][hapmap];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10237017	1.00[ASN][1000 genomes]
rs10242827	0.91[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025342	1.00[ASN][1000 genomes]
rs10255092	0.96[CEU][hapmap];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10258791	0.92[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10264450	0.92[CEU][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10278953	0.95[CEU][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10487364	1.00[ASN][1000 genomes]
rs12536356	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17139821	1.00[ASN][1000 genomes]
rs17450482	1.00[ASN][1000 genomes]
rs17544734	1.00[ASN][1000 genomes]
rs17545644	1.00[ASN][1000 genomes]
rs17547485	1.00[ASN][1000 genomes]
rs177071	1.00[ASN][1000 genomes]
rs1800503	1.00[ASN][1000 genomes]
rs2518872	1.00[ASN][1000 genomes]
rs254537	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs254538	0.83[CEU][hapmap];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34268361	1.00[ASN][1000 genomes]
rs34420782	1.00[ASN][1000 genomes]
rs34654194	1.00[ASN][1000 genomes]
rs35003065	1.00[ASN][1000 genomes]
rs35130797	1.00[ASN][1000 genomes]
rs35415299	1.00[ASN][1000 genomes]
rs35715578	1.00[ASN][1000 genomes]
rs35820454	1.00[ASN][1000 genomes]
rs35987553	1.00[ASN][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs39308	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39310	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39311	0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39314	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39320	0.88[CEU][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39321	0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39322	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs39325	0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4285411	0.91[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6466610	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6943509	1.00[ASN][1000 genomes]
rs6961545	1.00[ASN][1000 genomes]
rs6963669	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73480763	1.00[ASN][1000 genomes]
rs7779160	0.90[EUR][1000 genomes]
rs7795896	1.00[ASN][1000 genomes]
rs7802924	1.00[ASN][1000 genomes]
rs916727	0.91[CEU][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs916728	0.91[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886209	0.95[CEU][hapmap];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv608256	chr7:116928371-117040117	Bivalent Enhancer Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:116931800-116961600	Weak transcription	Placenta	Placenta
2	chr7:116937000-116954800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr7:116945200-116954400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:116950200-116952600	Genic enhancers	Fetal Lung	lung
5	chr7:116951800-116952400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr7:116951800-116952400	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr7:116951800-116952600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:116952200-116952400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr7:116952200-116952400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

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