Variant report
| Variant | rs7779160 |
|---|---|
| Chromosome Location | chr7:117065618-117065619 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:5)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:5 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr7:117059918..117062374-chr7:117064029..117066058,2 | K562 | blood: | |
| 2 | chr7:117059565..117061568-chr7:117064558..117067461,3 | K562 | blood: | |
| 3 | 7:117065049-117068137..7:117341506-117356953 | H1-hESC | embryonic stem cell: | embryo |
| 4 | chr7:117061266..117063418-chr7:117064588..117066201,2 | MCF-7 | breast: | |
| 5 | chr7:117064635..117066153-chr7:117066850..117069592,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000154438 | Chromatin interaction |
| ENSG00000001626 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs10230259 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs10242827 | 0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10255092 | 0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs10258791 | 0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10264450 | 0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs10278953 | 0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12536356 | 0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs177071 | 0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs254537 | 0.95[EUR][1000 genomes] |
| rs254538 | 0.85[EUR][1000 genomes] |
| rs35415299 | 0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs39308 | 0.89[EUR][1000 genomes] |
| rs39309 | 0.90[EUR][1000 genomes] |
| rs39310 | 0.86[EUR][1000 genomes] |
| rs39311 | 0.88[EUR][1000 genomes] |
| rs39314 | 0.92[EUR][1000 genomes] |
| rs39320 | 0.96[EUR][1000 genomes] |
| rs39321 | 0.94[EUR][1000 genomes] |
| rs39322 | 0.94[EUR][1000 genomes] |
| rs39325 | 0.96[EUR][1000 genomes] |
| rs4285411 | 0.82[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs6466610 | 0.97[EUR][1000 genomes] |
| rs6963669 | 0.97[EUR][1000 genomes] |
| rs7795896 | 0.88[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs916727 | 0.96[EUR][1000 genomes] |
| rs916728 | 0.81[AFR][1000 genomes];0.96[EUR][1000 genomes] |
| rs9886209 | 0.81[AFR][1000 genomes];0.96[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv889076 | chr7:117064625-117147547 | Active TSS Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr7:117064400-117066000 | Enhancers | GM12878-XiMat | blood |
