Variant report

Variant	rs7779015
Chromosome Location	chr7:117278565-117278566
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115847372-115857098..7:117274956-117280199	H1-hESC	embryonic stem cell:	embryo

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:78)

rs_ID	r²[population]
rs10155917	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10156138	1.00[ASN][1000 genomes]
rs10224175	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10227037	1.00[EUR][1000 genomes]
rs10230259	1.00[ASN][1000 genomes]
rs10234329	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240521	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10240654	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10242827	1.00[ASN][1000 genomes]
rs10244810	1.00[ASN][1000 genomes]
rs10249971	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1025342	1.00[ASN][1000 genomes]
rs10255092	1.00[ASN][1000 genomes]
rs10258791	1.00[ASN][1000 genomes]
rs10262610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10262673	1.00[ASN][1000 genomes]
rs10264450	1.00[ASN][1000 genomes]
rs10264892	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10266649	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10270610	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276355	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10276431	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10278953	1.00[ASN][1000 genomes]
rs10487364	1.00[ASN][1000 genomes]
rs11505934	1.00[EUR][1000 genomes]
rs12536356	1.00[ASN][1000 genomes]
rs17139821	1.00[ASN][1000 genomes]
rs17450482	1.00[ASN][1000 genomes]
rs17544734	1.00[ASN][1000 genomes]
rs17545644	1.00[ASN][1000 genomes]
rs17547485	1.00[ASN][1000 genomes]
rs177071	1.00[ASN][1000 genomes]
rs1800130	1.00[ASN][1000 genomes]
rs1800503	1.00[ASN][1000 genomes]
rs213972	1.00[ASN][1000 genomes]
rs2518872	1.00[ASN][1000 genomes]
rs28449716	1.00[ASN][1000 genomes]
rs28460732	1.00[EUR][1000 genomes]
rs28472519	1.00[ASN][1000 genomes]
rs28517401	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34268361	1.00[ASN][1000 genomes]
rs34420782	1.00[ASN][1000 genomes]
rs34606983	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34654194	1.00[ASN][1000 genomes]
rs34680574	1.00[EUR][1000 genomes]
rs34739284	1.00[EUR][1000 genomes]
rs34783030	1.00[EUR][1000 genomes]
rs35003065	1.00[ASN][1000 genomes]
rs35130797	1.00[ASN][1000 genomes]
rs35191087	1.00[EUR][1000 genomes]
rs35309708	1.00[EUR][1000 genomes]
rs35342599	1.00[ASN][1000 genomes]
rs35358095	1.00[EUR][1000 genomes]
rs35415299	1.00[ASN][1000 genomes]
rs35615558	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35715578	1.00[ASN][1000 genomes]
rs35775845	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35777371	1.00[ASN][1000 genomes]
rs35820454	1.00[ASN][1000 genomes]
rs35987553	1.00[ASN][1000 genomes]
rs35995554	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs36042090	1.00[ASN][1000 genomes]
rs36082161	1.00[ASN][1000 genomes]
rs4148717	1.00[ASN][1000 genomes]
rs4285411	1.00[ASN][1000 genomes]
rs6466610	1.00[ASN][1000 genomes]
rs6466615	0.91[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6943074	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6965682	1.00[ASN][1000 genomes]
rs6968747	1.00[ASN][1000 genomes]
rs73480763	1.00[ASN][1000 genomes]
rs7795896	1.00[ASN][1000 genomes]
rs7799504	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7802924	1.00[ASN][1000 genomes]
rs7808474	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7809485	1.00[ASN][1000 genomes]
rs7812185	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9886209	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3384260	chr7:117277612-117278579	Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117258200-117286600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:117269400-117283000	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr7:117270800-117285600	Weak transcription	Stomach Mucosa	stomach
5	chr7:117271600-117285600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr7:117271800-117281600	Weak transcription	Duodenum Mucosa	Duodenum
7	chr7:117271800-117285600	Weak transcription	Fetal Intestine Large	intestine
8	chr7:117272600-117286600	Weak transcription	Fetal Intestine Small	intestine
9	chr7:117274600-117287400	Weak transcription	Sigmoid Colon	Sigmoid Colon

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