Variant report

Variant	rs34567454
Chromosome Location	chr7:117270842-117270843
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	7:115890993-115892266..7:117270436-117273185	Hela-S3	cervix:
2	chr7:117259697..117261573-chr7:117270722..117272791,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000135269	Chromatin interaction

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10244810	0.89[EUR][1000 genomes]
rs10246649	0.96[EUR][1000 genomes]
rs1800130	0.87[EUR][1000 genomes]
rs28449716	0.96[EUR][1000 genomes]
rs28472519	0.96[EUR][1000 genomes]
rs34034651	0.96[EUR][1000 genomes]
rs34151592	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34201995	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34309075	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34464201	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34480179	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34489981	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs34511745	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs34587451	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34652497	0.86[EUR][1000 genomes]
rs34674313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34830471	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34830562	0.83[EUR][1000 genomes]
rs34849722	0.86[EUR][1000 genomes]
rs34995970	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35294574	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35305858	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35320768	1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35475211	0.96[EUR][1000 genomes]
rs35504264	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35506750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35537814	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35553213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35783977	0.83[EUR][1000 genomes]
rs35836271	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35900505	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35916162	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs36042090	0.96[EUR][1000 genomes]
rs36046385	0.86[EUR][1000 genomes]
rs36117041	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4148717	0.96[EUR][1000 genomes]
rs6965682	0.96[EUR][1000 genomes]
rs6968747	0.96[EUR][1000 genomes]
rs7809485	0.96[EUR][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:117245200-117294000	Weak transcription	Pancreas	Pancrea
2	chr7:117258200-117286600	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr7:117265600-117271600	Weak transcription	Duodenum Mucosa	Duodenum
4	chr7:117267200-117271800	Strong transcription	Fetal Intestine Large	intestine
5	chr7:117269400-117283000	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr7:117270200-117271000	Enhancers	iPS-20b Cell Line	embryonic stem cell
7	chr7:117270200-117272000	Enhancers	H1 Cell Line	embryonic stem cell
8	chr7:117270400-117271000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr7:117270400-117271000	Flanking Active TSS	Dnd41	blood
10	chr7:117270400-117271000	Enhancers	GM12878-XiMat	blood
11	chr7:117270400-117271200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr7:117270600-117271000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:117270600-117271000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr7:117270600-117271000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr7:117270600-117271000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr7:117270600-117271000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr7:117270600-117271000	Enhancers	HMEC	breast
18	chr7:117270600-117271200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr7:117270600-117271600	Weak transcription	HUES6 Cell Line	embryonic stem cell
20	chr7:117270600-117272600	ZNF genes & repeats	Fetal Intestine Small	intestine
21	chr7:117270800-117271600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr7:117270800-117271800	Weak transcription	HUES48 Cell Line	embryonic stem cell
23	chr7:117270800-117285600	Weak transcription	Stomach Mucosa	stomach

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