Variant report

Variant	rs34834193
Chromosome Location	chr11:100740937-100740938
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:100738487..100741101-chr11:100743408..100746316,3	K562	blood:
2	chr11:100732938..100736079-chr11:100738276..100741715,4	K562	blood:
3	chr11:100736156..100739603-chr11:100739743..100742359,3	MCF-7	breast:
4	chr11:100739216..100741248-chr11:100744274..100747106,3	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1074544	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11604197	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs11605292	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12792417	0.91[EUR][1000 genomes]
rs12798154	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17653373	0.99[EUR][1000 genomes]
rs17653824	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1941373	0.92[EUR][1000 genomes]
rs2197145	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34877157	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34981694	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35174329	0.91[EUR][1000 genomes]
rs35997600	0.91[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7128526	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7927459	0.84[EUR][1000 genomes]
rs7939833	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943500	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle
2	chr11:100722800-100746400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:100722800-100747200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr11:100728800-100741000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr11:100733800-100746000	Weak transcription	Fetal Muscle Trunk	muscle
6	chr11:100734200-100748400	Weak transcription	Left Ventricle	heart
7	chr11:100734400-100747400	Weak transcription	Adipose Nuclei	Adipose
8	chr11:100734400-100747600	Weak transcription	Fetal Stomach	stomach
9	chr11:100734400-100747600	Weak transcription	Right Atrium	heart
10	chr11:100734600-100741200	Weak transcription	Fetal Intestine Small	intestine
11	chr11:100734800-100743200	Weak transcription	HSMM	muscle
12	chr11:100737600-100745400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr11:100737800-100741400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
14	chr11:100738200-100744200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr11:100739000-100743400	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr11:100740000-100741200	Enhancers	Fetal Heart	heart
17	chr11:100740000-100741400	Enhancers	K562	blood
18	chr11:100740200-100741200	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr11:100740200-100741200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
20	chr11:100740200-100741200	Enhancers	HUES48 Cell Line	embryonic stem cell
21	chr11:100740200-100741400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr11:100740200-100741400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr11:100740400-100741600	Enhancers	iPS-18 Cell Line	embryonic stem cell
24	chr11:100740600-100741000	Enhancers	Stomach Mucosa	stomach
25	chr11:100740600-100741200	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr11:100740600-100741400	Enhancers	Fetal Intestine Large	intestine
27	chr11:100740600-100741600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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