Variant report

Variant	rs7128526
Chromosome Location	chr11:100747607-100747608
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:100746250..100747897-chr11:100756047..100758540,2	MCF-7	breast:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1074544	1.00[EUR][1000 genomes]
rs11604197	0.99[EUR][1000 genomes]
rs11605292	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12792417	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs12798154	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17653373	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs17653824	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1941373	0.92[EUR][1000 genomes]
rs2197145	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34834193	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs34877157	1.00[EUR][1000 genomes]
rs34981694	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35174329	0.91[EUR][1000 genomes]
rs35997600	0.99[EUR][1000 genomes]
rs7927459	0.84[EUR][1000 genomes]
rs7939833	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7943500	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100734200-100748400	Weak transcription	Left Ventricle	heart
2	chr11:100741400-100750200	Weak transcription	K562	blood
3	chr11:100741600-100748200	Weak transcription	Fetal Intestine Small	intestine
4	chr11:100743000-100748200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr11:100743200-100749600	Enhancers	HSMM	muscle
6	chr11:100744400-100748400	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr11:100744400-100748400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr11:100744600-100748400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr11:100744800-100748400	Enhancers	HUES6 Cell Line	embryonic stem cell
10	chr11:100745400-100749200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr11:100746000-100750200	Enhancers	HSMMtube	muscle
12	chr11:100746200-100749200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:100746200-100750000	Enhancers	NHLF	lung
14	chr11:100746400-100748400	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr11:100746400-100749400	Enhancers	NH-A	brain
16	chr11:100746400-100750200	Enhancers	Osteobl	bone
17	chr11:100746400-100750600	Enhancers	NHDF-Ad	bronchial
18	chr11:100746600-100748000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr11:100746600-100748400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr11:100746600-100748400	Weak transcription	Fetal Muscle Trunk	muscle
21	chr11:100746600-100758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr11:100746800-100748200	Enhancers	Rectal Smooth Muscle	rectum
23	chr11:100746800-100749400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:100747000-100748400	Enhancers	NHEK	skin
25	chr11:100747000-100749200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:100747200-100747800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr11:100747200-100747800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr11:100747200-100748000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr11:100747200-100748200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr11:100747200-100748200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr11:100747200-100748400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr11:100747400-100747800	Enhancers	HMEC	breast
33	chr11:100747400-100748200	Enhancers	iPS-15b Cell Line	embryonic stem cell
34	chr11:100747400-100748400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr11:100747400-100749600	Enhancers	Adipose Nuclei	Adipose
36	chr11:100747600-100747800	Enhancers	H1 Cell Line	embryonic stem cell
37	chr11:100747600-100747800	Enhancers	H9 Cell Line	embryonic stem cell
38	chr11:100747600-100747800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
39	chr11:100747600-100747800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr11:100747600-100747800	Enhancers	Muscle Satellite Cultured Cells	--
41	chr11:100747600-100747800	Enhancers	Fetal Muscle Leg	muscle
42	chr11:100747600-100747800	Enhancers	Fetal Stomach	stomach
43	chr11:100747600-100747800	Enhancers	Psoas Muscle	Psoas
44	chr11:100747600-100747800	Enhancers	Right Atrium	heart
45	chr11:100747600-100748200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr11:100747600-100750200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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