Variant report

Variant	rs35174329
Chromosome Location	chr11:100720397-100720398
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1074544	0.91[EUR][1000 genomes]
rs11604197	0.92[EUR][1000 genomes]
rs11605292	0.87[EUR][1000 genomes]
rs12792417	0.86[EUR][1000 genomes]
rs12798154	0.91[EUR][1000 genomes]
rs17653373	0.92[EUR][1000 genomes]
rs17653824	0.88[EUR][1000 genomes]
rs1941373	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2197145	0.91[EUR][1000 genomes]
rs34834193	0.91[EUR][1000 genomes]
rs34877157	0.91[EUR][1000 genomes]
rs34981694	0.82[EUR][1000 genomes]
rs35997600	0.92[EUR][1000 genomes]
rs7128526	0.91[EUR][1000 genomes]
rs7927459	0.91[EUR][1000 genomes]
rs7939833	0.91[EUR][1000 genomes]
rs7943500	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
3	nsv468849	chr11:100713227-100733120	Enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv556129	chr11:100713227-100733120	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100699600-100722400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr11:100703000-100731800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:100713400-100722000	Weak transcription	Hela-S3	cervix
4	chr11:100716800-100727000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr11:100717600-100722800	Enhancers	Fetal Heart	heart
6	chr11:100717800-100721600	Weak transcription	Placenta	Placenta
7	chr11:100718200-100720400	Enhancers	Fetal Lung	lung
8	chr11:100718200-100721000	Enhancers	Stomach Mucosa	stomach
9	chr11:100719000-100721200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr11:100719000-100722600	Enhancers	NHDF-Ad	bronchial
11	chr11:100719400-100720600	Flanking Active TSS	Liver	Liver
12	chr11:100719400-100721000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr11:100719400-100721000	Enhancers	Fetal Intestine Small	intestine
14	chr11:100719400-100721600	Enhancers	Fetal Stomach	stomach
15	chr11:100719400-100722200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr11:100719400-100722800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr11:100719600-100720600	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:100719600-100720600	Enhancers	Adipose Nuclei	Adipose
19	chr11:100719600-100720800	Enhancers	Rectal Smooth Muscle	rectum
20	chr11:100719600-100721000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:100719600-100721000	Enhancers	Fetal Intestine Large	intestine
22	chr11:100719600-100721000	Enhancers	Osteobl	bone
23	chr11:100719600-100721200	Enhancers	NH-A	brain
24	chr11:100719600-100722000	Enhancers	NHLF	lung
25	chr11:100719800-100720600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr11:100720000-100720600	Enhancers	Stomach Smooth Muscle	stomach
27	chr11:100720000-100721000	Enhancers	Colon Smooth Muscle	Colon
28	chr11:100720000-100721200	Enhancers	Pancreatic Islets	Pancreatic Islet
29	chr11:100720000-100721600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr11:100720000-100721800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr11:100720200-100720600	Flanking Active TSS	Muscle Satellite Cultured Cells	--
32	chr11:100720200-100720600	Weak transcription	Fetal Kidney	kidney
33	chr11:100720200-100720800	Enhancers	A549	lung
34	chr11:100720200-100721200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
35	chr11:100720200-100721800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr11:100720200-100722400	Weak transcription	Sigmoid Colon	Sigmoid Colon
37	chr11:100720200-100745000	Weak transcription	Fetal Muscle Leg	muscle

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