Variant report

Variant	rs34981694
Chromosome Location	chr11:100750873-100750874
allele	CA/TG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1074544	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11604197	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11605292	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12792417	0.81[EUR][1000 genomes]
rs12798154	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17653373	0.89[EUR][1000 genomes]
rs17653824	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1941373	0.83[EUR][1000 genomes]
rs2197145	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34834193	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs34877157	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs35174329	0.82[EUR][1000 genomes]
rs35997600	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7128526	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7939833	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7943500	0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1048356	chr11:100713096-101058995	Strong transcription Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv541154	chr11:100713096-101058995	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:100746600-100758400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:100747800-100755600	Weak transcription	Right Atrium	heart
3	chr11:100748000-100754200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:100749200-100758400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:100749400-100759600	Weak transcription	NH-A	brain
6	chr11:100749600-100761200	Weak transcription	HSMM	muscle
7	chr11:100750200-100751400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr11:100750200-100754800	Weak transcription	HSMMtube	muscle
9	chr11:100750600-100760800	Weak transcription	NHDF-Ad	bronchial

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links