Variant report

Variant	rs34851
Chromosome Location	chr5:115162792-115162793
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:115156222..115160428-chr5:115162227..115164620,4	K562	blood:
2	chr5:115154523..115156053-chr5:115161178..115163651,2	K562	blood:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10434761	0.98[ASN][1000 genomes]
rs1058600	0.97[ASN][1000 genomes]
rs12189155	0.86[ASN][1000 genomes]
rs12520248	0.98[ASN][1000 genomes]
rs12521324	0.89[ASN][1000 genomes]
rs13174348	0.90[ASN][1000 genomes]
rs152368	0.81[ASN][1000 genomes]
rs152398	0.81[ASN][1000 genomes]
rs154757	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs154759	0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs258738	0.83[ASN][1000 genomes]
rs26529	0.81[ASN][1000 genomes]
rs26531	0.85[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs26533	0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs26534	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs26535	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs26536	0.87[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs26537	0.86[ASN][1000 genomes]
rs34850	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs34852	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34869	0.95[ASN][1000 genomes]
rs35053218	0.93[ASN][1000 genomes]
rs35179959	0.97[ASN][1000 genomes]
rs35501287	0.80[ASN][1000 genomes]
rs35903246	0.95[ASN][1000 genomes]
rs3797570	0.96[ASN][1000 genomes]
rs40095	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4920892	0.83[ASN][1000 genomes]
rs57633641	0.96[ASN][1000 genomes]
rs61381571	0.80[ASN][1000 genomes]
rs6594906	0.96[ASN][1000 genomes]
rs6872406	0.99[ASN][1000 genomes]
rs6880889	0.96[ASN][1000 genomes]
rs71581214	0.83[ASN][1000 genomes]
rs7713314	0.80[ASN][1000 genomes]
rs7726368	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:99 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115152800-115171200	Weak transcription	Rectal Smooth Muscle	rectum
2	chr5:115153200-115169600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr5:115153400-115164400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr5:115153400-115164400	Weak transcription	Adipose Nuclei	Adipose
5	chr5:115153600-115163800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:115153600-115172400	Weak transcription	Fetal Brain Male	brain
7	chr5:115154000-115163800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr5:115154200-115163800	Weak transcription	Liver	Liver
9	chr5:115154400-115169600	Weak transcription	Brain Angular Gyrus	brain
10	chr5:115154600-115173000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr5:115154800-115169200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr5:115155000-115163600	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr5:115155000-115164000	Weak transcription	Brain Hippocampus Middle	brain
14	chr5:115155000-115169200	Weak transcription	Brain Anterior Caudate	brain
15	chr5:115155000-115169800	Weak transcription	Brain Cingulate Gyrus	brain
16	chr5:115155000-115174400	Weak transcription	Fetal Heart	heart
17	chr5:115155200-115167200	Weak transcription	Brain Substantia Nigra	brain
18	chr5:115155200-115169400	Weak transcription	Brain Germinal Matrix	brain
19	chr5:115157600-115171000	Weak transcription	Thymus	Thymus
20	chr5:115158000-115163000	Weak transcription	Primary neutrophils fromperipheralblood	blood
21	chr5:115159000-115169000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
22	chr5:115159200-115163800	Weak transcription	Fetal Thymus	thymus
23	chr5:115159200-115164200	Weak transcription	HUVEC	blood vessel
24	chr5:115159400-115163400	Weak transcription	NHDF-Ad	bronchial
25	chr5:115160000-115169600	Weak transcription	Psoas Muscle	Psoas
26	chr5:115160400-115163200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:115160400-115164000	Weak transcription	Fetal Kidney	kidney
28	chr5:115160600-115164000	Weak transcription	Muscle Satellite Cultured Cells	--
29	chr5:115160600-115164000	Weak transcription	Monocytes-CD14+_RO01746	blood
30	chr5:115160600-115169800	Weak transcription	Left Ventricle	heart
31	chr5:115160800-115164000	Weak transcription	NHLF	lung
32	chr5:115160800-115164200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr5:115160800-115164400	Weak transcription	Fetal Intestine Large	intestine
34	chr5:115161000-115164000	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr5:115161000-115164400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr5:115161200-115164400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr5:115161200-115166200	Weak transcription	HMEC	breast
38	chr5:115161400-115163600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr5:115161400-115164000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
40	chr5:115161400-115169600	Weak transcription	Ovary	ovary
41	chr5:115161600-115163000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr5:115161600-115163800	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr5:115161800-115163400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
44	chr5:115161800-115163400	Weak transcription	Duodenum Mucosa	Duodenum
45	chr5:115161800-115163400	Weak transcription	NH-A	brain
46	chr5:115161800-115163800	Weak transcription	Primary B cells from peripheral blood	blood
47	chr5:115161800-115164000	Weak transcription	A549	lung
48	chr5:115161800-115164400	Weak transcription	Skeletal Muscle Male	skeletal muscle
49	chr5:115161800-115176200	Weak transcription	Gastric	stomach
50	chr5:115162000-115163400	Weak transcription	Primary B cells from cord blood	blood

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