Variant report

Variant	rs26529
Chromosome Location	chr5:115184450-115184451
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:115184132..115185974-chr5:115190378..115192818,2	K562	blood:
2	chr5:115178121..115180893-chr5:115182608..115185820,5	MCF-7	breast:
3	chr5:115176229..115180179-chr5:115182014..115185415,8	K562	blood:
4	chr5:115175731..115178012-chr5:115183741..115186810,4	MCF-7	breast:
5	chr5:115183144..115185225-chr5:115190544..115193329,2	MCF-7	breast:
6	chr5:115183571..115185116-chr5:115205126..115206631,2	K562	blood:
7	chr5:115180395..115183279-chr5:115183333..115187218,5	K562	blood:
8	chr5:115180572..115182722-chr5:115184299..115187218,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000177879	Chromatin interaction
ENSG00000145782	Chromatin interaction

Extended variants
information (count: 65 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10039749	0.94[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10050876	0.85[ASN][1000 genomes]
rs1058600	0.89[CHD][hapmap];0.82[ASN][1000 genomes]
rs10751460	0.97[ASN][1000 genomes]
rs11241336	0.99[ASN][1000 genomes]
rs11241337	1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12188972	1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs12332653	1.00[CHB][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs12513891	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12514553	0.98[ASN][1000 genomes]
rs12517882	0.99[ASN][1000 genomes]
rs12519850	0.91[ASN][1000 genomes]
rs12520442	0.91[ASN][1000 genomes]
rs12523122	0.91[ASN][1000 genomes]
rs13157716	0.99[ASN][1000 genomes]
rs13179199	0.94[ASN][1000 genomes]
rs13361489	0.94[ASN][1000 genomes]
rs152368	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];1.00[ASN][1000 genomes]
rs152369	0.99[ASN][1000 genomes]
rs152397	1.00[CHB][hapmap];0.89[CHD][hapmap];0.95[JPT][hapmap];0.99[ASN][1000 genomes]
rs152398	0.91[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs171809	0.95[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.97[ASN][1000 genomes]
rs2080902	0.99[ASN][1000 genomes]
rs26531	0.92[CHD][hapmap]
rs26533	0.81[ASN][1000 genomes]
rs26534	0.94[CHD][hapmap];0.83[GIH][hapmap];0.82[ASN][1000 genomes]
rs26535	0.82[ASN][1000 genomes]
rs26536	0.89[CHD][hapmap];0.91[JPT][hapmap];0.86[ASN][1000 genomes]
rs26537	0.86[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];0.93[TSI][hapmap];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs26538	0.81[CEU][hapmap];0.95[CHB][hapmap];0.92[CHD][hapmap];0.85[GIH][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34851	0.81[ASN][1000 genomes]
rs34852	0.80[ASN][1000 genomes]
rs35179959	0.82[ASN][1000 genomes]
rs35238578	0.93[ASN][1000 genomes]
rs35501287	0.99[ASN][1000 genomes]
rs35903246	0.80[ASN][1000 genomes]
rs3733902	0.81[CHB][hapmap]
rs3756555	0.81[CHB][hapmap]
rs3797564	0.86[CHB][hapmap]
rs3797565	0.90[ASN][1000 genomes]
rs3797566	0.81[CHB][hapmap]
rs3797567	0.95[CHB][hapmap];0.81[CHD][hapmap];0.86[JPT][hapmap];0.93[ASN][1000 genomes]
rs3797568	0.95[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3797569	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs3797570	0.94[CHD][hapmap];0.81[ASN][1000 genomes]
rs40095	0.80[ASN][1000 genomes]
rs41332950	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs4143542	1.00[CHB][hapmap];0.86[CHD][hapmap];0.91[JPT][hapmap];0.93[ASN][1000 genomes]
rs57633641	0.81[ASN][1000 genomes]
rs58463583	0.85[ASN][1000 genomes]
rs59750231	0.99[ASN][1000 genomes]
rs61381571	0.99[ASN][1000 genomes]
rs6594906	0.81[ASN][1000 genomes]
rs6872406	0.94[CHD][hapmap];0.80[ASN][1000 genomes]
rs6879485	0.96[ASN][1000 genomes]
rs6880372	0.88[ASN][1000 genomes]
rs6880889	0.92[CHD][hapmap];0.81[ASN][1000 genomes]
rs71581217	0.91[ASN][1000 genomes]
rs7707539	0.97[ASN][1000 genomes]
rs7713314	0.99[ASN][1000 genomes]
rs7726368	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
2	nsv949677	chr5:115104829-115496168	Enhancers Weak transcription Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv3410990	chr5:115177597-115205832	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	17 gene(s)	inside rSNPs	diseases
4	esv3382194	chr5:115177673-115205801	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:115178600-115192200	Weak transcription	Gastric	stomach
2	chr5:115178800-115192200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr5:115179000-115185200	Weak transcription	Spleen	Spleen
4	chr5:115179000-115185400	Weak transcription	Brain Angular Gyrus	brain
5	chr5:115179000-115189600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr5:115179000-115194800	Weak transcription	HSMMtube	muscle
7	chr5:115179400-115186200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:115179400-115186400	Weak transcription	NHLF	lung
9	chr5:115179400-115192200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr5:115179600-115185000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr5:115179600-115185000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr5:115179600-115185400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr5:115179600-115186400	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr5:115179800-115185000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr5:115179800-115185200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr5:115179800-115186600	Weak transcription	Osteobl	bone
17	chr5:115179800-115193000	Weak transcription	Primary T cells from cord blood	blood
18	chr5:115179800-115205000	Weak transcription	HSMM	muscle
19	chr5:115180200-115185400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
20	chr5:115180200-115185800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr5:115180200-115192600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:115180200-115192600	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr5:115180400-115185200	Weak transcription	Esophagus	oesophagus
24	chr5:115180400-115185200	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr5:115180400-115185800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr5:115180400-115186200	Weak transcription	A549	lung
27	chr5:115180400-115186600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr5:115180400-115186600	Weak transcription	Skeletal Muscle Male	skeletal muscle
29	chr5:115180400-115189200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr5:115180600-115185000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr5:115180600-115185000	Weak transcription	HUES6 Cell Line	embryonic stem cell
32	chr5:115180600-115185800	Weak transcription	Fetal Kidney	kidney
33	chr5:115180600-115186200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
34	chr5:115180600-115186200	Weak transcription	NHDF-Ad	bronchial
35	chr5:115180600-115186400	Weak transcription	Brain Hippocampus Middle	brain
36	chr5:115180600-115186400	Weak transcription	Small Intestine	intestine
37	chr5:115180600-115186800	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr5:115180600-115193000	Weak transcription	Fetal Stomach	stomach
39	chr5:115180800-115186600	Weak transcription	Aorta	Aorta
40	chr5:115181200-115184800	Weak transcription	Fetal Heart	heart
41	chr5:115181200-115185800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr5:115181200-115186200	Weak transcription	Brain Anterior Caudate	brain
43	chr5:115181200-115186400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr5:115181200-115186600	Weak transcription	Stomach Smooth Muscle	stomach
45	chr5:115181400-115185000	Weak transcription	Fetal Brain Female	brain
46	chr5:115181400-115185000	Weak transcription	Right Ventricle	heart
47	chr5:115181400-115185200	Weak transcription	Right Atrium	heart
48	chr5:115181400-115185400	Weak transcription	Brain Germinal Matrix	brain
49	chr5:115181400-115185400	Weak transcription	Fetal Lung	lung
50	chr5:115181400-115186200	Weak transcription	Liver	Liver

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