Variant report
| Variant | rs348537 |
|---|---|
| Chromosome Location | chr4:45242229-45242230 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:20)
| rs_ID | r2[population] |
|---|---|
| rs1604148 | 0.84[EUR][1000 genomes] |
| rs17449242 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17533734 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs348497 | 0.94[EUR][1000 genomes] |
| rs348509 | 0.84[EUR][1000 genomes] |
| rs348527 | 0.85[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs348538 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs348540 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs348542 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs348552 | 1.00[EUR][1000 genomes] |
| rs348553 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs385643 | 0.85[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs407348 | 1.00[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs448110 | 0.97[EUR][1000 genomes] |
| rs4499729 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4695094 | 0.94[EUR][1000 genomes] |
| rs4695095 | 0.88[EUR][1000 genomes] |
| rs4695099 | 1.00[AFR][1000 genomes] |
| rs6447442 | 0.88[EUR][1000 genomes] |
| rs7436227 | 1.00[AFR][1000 genomes];0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv829919 | chr4:45069901-45253808 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription | Chromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv594104 | chr4:45105210-45665828 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 3 | nsv461349 | chr4:45175691-45265046 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv594105 | chr4:45175691-45265046 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv878984 | chr4:45191856-45321022 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 6 | nsv461351 | chr4:45224500-45283866 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 7 | nsv594106 | chr4:45224500-45283866 | Enhancers Weak transcription ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| 8 | nsv4322 | chr4:45235596-45280072 | Weak transcription Enhancers ZNF genes & repeats | Chromatin interactive region | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr4:45237600-45243800 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
