Variant report

Variant	rs6447442
Chromosome Location	chr4:45297536-45297537
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs17449242	0.88[EUR][1000 genomes]
rs17533734	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs348497	0.82[EUR][1000 genomes]
rs348537	0.88[EUR][1000 genomes]
rs348538	0.88[EUR][1000 genomes]
rs348540	0.88[EUR][1000 genomes]
rs348542	0.88[EUR][1000 genomes]
rs348552	0.88[EUR][1000 genomes]
rs348553	0.88[EUR][1000 genomes]
rs407348	0.85[EUR][1000 genomes]
rs448110	0.85[EUR][1000 genomes]
rs4499729	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4695094	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4695095	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7436227	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv878984	chr4:45191856-45321022	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45295000-45297600	Enhancers	Stomach Mucosa	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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