Variant report

Variant	rs407348
Chromosome Location	chr4:45212798-45212799
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs1604148	0.87[EUR][1000 genomes]
rs17449242	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17533734	0.90[EUR][1000 genomes]
rs348497	0.97[EUR][1000 genomes]
rs348509	0.87[EUR][1000 genomes]
rs348527	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs348537	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs348538	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs348540	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs348542	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs348552	0.97[EUR][1000 genomes]
rs348553	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs385643	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs448110	1.00[EUR][1000 genomes]
rs4499729	0.90[EUR][1000 genomes]
rs4695094	0.90[EUR][1000 genomes]
rs4695095	0.85[EUR][1000 genomes]
rs6447442	0.85[EUR][1000 genomes]
rs7436227	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014327	chr4:44735209-45218149	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv829919	chr4:45069901-45253808	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv594104	chr4:45105210-45665828	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv461349	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv594105	chr4:45175691-45265046	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv878984	chr4:45191856-45321022	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:45202000-45214600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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